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Development November 2022#64

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sacdallago merged 16 commits intosacdallago:mainsacdallago/biotrainer:mainfrom SebieF:dev-11-22SebieF/biotrainer:dev-11-22Copy head branch name to clipboardJan 2, 2023

+234-98

Commits

Commits on Dec 30, 2022

• Adding device logging to trainer

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• Fixing path to string for pretrained model

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• Moving conversion dataset -> tensor to embeddings.py

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• Replacing saving of training, validation, test ids by saving the numbers

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• Using absolute time for output vars instead of perf_counter time

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• Exporting ConfigurationException properly

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• Adding sanity checker (initial commit)

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• Fixing metrics loading in sanity_checker check test results

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• Adding limit sample size flag

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• Removing unnecessary double-loading of checkpoint for test evaluation

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• Adding metrics from best training iteration to out.yml file

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• Adding typing to split lists

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• Applying _validate_targets to all protocols

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• Adding Changelog with versions 0.2.0 and 0.2.1

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• Distinguishing between _to_class and _to_value protocol in sanity_checker

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• Making _handle_result private in sanity_checker

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