remove bug message #21

	name: developer_docs
	# build the documentation whenever there are new commits on main
	on:
	push:
	branches:
	- main

	# security: restrict permissions for CI jobs.
	permissions:
	contents: read

	jobs:
	# Build the documentation and upload the static HTML files as an artifact.
	build:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: '3.13'
	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	mamba-version: "*"
	channels: conda-forge,bioconda,defaults
	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Install conda dependencies
	run: conda env update --file environment.yml --name base
	- name: Build and install SACCHARIS
	run: \|
	conda install conda-build
	conda build .
	conda install --use-local saccharis
	- name: Install and run pdoc
	run: \|
	conda install pdoc
	pdoc -o docs src/saccharis --logo "https://github.com/saccharis/SACCHARIS_2/blob/main/logo_caps_light-dark.png?raw=true"
	- uses: actions/upload-pages-artifact@v3
	with:
	path: docs/

	# Deploy the artifact to GitHub pages.
	# This is a separate job so that only actions/deploy-pages has the necessary permissions.
	deploy:
	needs: build
	runs-on: ubuntu-latest
	permissions:
	pages: write
	id-token: write
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	steps:
	- id: deployment
	uses: actions/deploy-pages@v4

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