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Lubuntu 14.04 live USB for DNA sequence analysis
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@rwhetten rwhetten released this 02 Aug 19:58
· 2 commits to master since this release
0.5
01a8770

Analytical and General Tools

  • R v3.1, with lattice, RSQLite, and matrix packages
  • Bioconductor, with GenomicFeatures, biomaRt, GenomicRanges, Rsamtools, rtracklayer, DESeq2
  • Open JDK 7
  • bwa 0.7.10
  • samtools 0.1.19, with razip, bcftools, and vcfutils.pl
  • fastx-toolkit
  • GemSIM v 1.6 DNA sequence read simulator and associated Python programs
  • SciTE editor
  • extundelete

Libraries and System Tools

  • tcl-tk 8.5
  • Gnu Scientific Libraries
  • Google sparsehash
  • scintilla
  • Python with python-scipy, python-numpy, and python-nose
Assets 3
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