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Update README.md
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rpetit3 authored Aug 4, 2022
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Expand Up @@ -23,14 +23,12 @@ The PBP typing scheme is based methods described in _[Li et. al.](https://journa

### Conda

Once released this will be added to Bioconda, in the meantime this should work.
`pbptyper`is available from Bioconda

```{bash}
mamba create -n pbptyper-dev -c conda-forge -c bioconda rich-click executor 'python>=3.7' blast
conda activate pbptyper-dev
git clone [email protected]:rpetit3/pbptyper.git
cd pbptyper
bin/pbptyper --help
mamba create -n pbptyper -c conda-forge -c bioconda pbptyper
conda activate pbptyper
pbptyper --help
```

## Usage
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