Making dependency pinnings bundle only (#202)

* initial commit

* debug attempt to aydin.cli.test.test_info

* updated with latest master

* unpinning more dependencies

* unpinned numba as well

* fixing click version back to check if same problem occurs

* test cli fix

* removed redundant print statements

Co-authored-by: acs-ws <[email protected]>

aydin/cli/test/test_cli.py

@@ -10,7 +10,7 @@ def test_info():
         image_path = examples_single.generic_lizard.get_path()
 
         runner = CliRunner()
-        result = runner.invoke(cli, ['info', image_path])
+        result = runner.invoke(cli, ['info', image_path, '--slicing', ""])
 
         assert result.exit_code == 0
         assert "Reading" in result.output

setup.cfg

@@ -27,6 +27,36 @@ packages = find:
 python_requires = >=3.9
 include_package_data = True
 install_requires =
+    catboost>=1.0.5
+    Click==8.0.3
+    czifile>=2019.7.2
+    docstring-parser>=0.13
+    gdown==4.2.0
+    googledrivedownloader==0.4
+    importlib-metadata>=4.10.0
+    jsonpickle==1.3.0
+    lightgbm>=3.3.1
+    napari==0.4.15
+    nd2reader==3.3.0
+    numba>=0.55.1
+    numexpr==2.8.1
+    numpy>=1.19.2
+    protobuf==3.20.1
+    pynndescent==0.5.5
+    PyQt5>=5.15.6
+    QDarkStyle==3.0.2
+    qtpy>=1.11.2
+    scikit-image==0.18.3
+    scipy==1.7.3
+    tensorflow==2.8.1
+    torch==1.10.1
+    keras==2.8.0
+    zarr==2.4.0
+    imagecodecs==2022.2.22
+    memoization==0.4.0
+
+[options.extras_require]
+bundle =
     catboost==1.0.5
     Click==8.0.3
     czifile==2019.7.2
@@ -36,7 +66,7 @@ install_requires =
     importlib-metadata==4.10.0
     jsonpickle==1.3.0
     lightgbm==3.3.1
-    napari==0.4.15
+    napari==0.4.12
     nd2reader==3.3.0
     numba==0.55.1
     numexpr==2.8.1