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Trimming

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Rodrigo O. Polo edited this page Dec 11, 2018 · 2 revisions

The program Trimmomatic will be applied to trimming reads.

Toggle table of contents Pages 10

Home
Assembly evaluation
Bringing it all together with Snakemake
De novo assembly
Genome annotation
Nullarbor pipeline
Quality assessment
Quick introduction to Linux
Serotype identification
Trimming

Home
Quick introduction to Linux
Data pre-processing:
- Quality assessment
- Trimming
De novo assembly:
- De novo assembly
- Assembly evaluation
Genome annotation
Serotype identification
Bringing it all together with Snakemake

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