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Update README.Rmd

Update README.Rmd #33

Workflow file for this run

on: [push, pull_request]
name: R-check
jobs:
R-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.rshort }}-couch(${{ matrix.config.couch }}))
strategy:
fail-fast: false
matrix:
config:
- { os: ubuntu-16.04, r: 'release', rshort: 'rel', couch: 'latest', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- { os: ubuntu-16.04, r: 'oldrel', rshort: 'old', couch: 'latest', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- { os: ubuntu-16.04, r: 'release', rshort: 'rel', couch: '2.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
- { os: ubuntu-16.04, r: 'release', rshort: 'rel', couch: '2.1', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
# - { os: ubuntu-16.04, r: 'release', rshort: 'rel', couch: '1.7', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
services:
couchdb:
image: couchdb:${{ matrix.config.couch }}
env:
COUCHDB_USER: admin
COUCHDB_PASSWORD: password
ports:
- 5984:5984
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
CRAN: ${{ matrix.config.rspm }}
COUCHDB_TEST_USER: admin
COUCHDB_TEST_PWD: password
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@master
- uses: r-lib/actions/setup-tinytex@master
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install dependencies
run: Rscript -e "install.packages('remotes')" -e "remotes::install_deps(dependencies = TRUE)" -e "remotes::install_cran('rcmdcheck')"
- name: Session info
run: |
options(width = 100)
pkgs <- installed.packages()[, "Package"]
sessioninfo::session_info(pkgs, include_base = TRUE)
shell: Rscript {0}
- name: Check
run: Rscript -e "rcmdcheck::rcmdcheck(args = c('--as-cran', '${{ matrix.config.args }}'), error_on = 'warning', check_dir = 'check')"
- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Test coverage
if: matrix.config.os == 'ubuntu-16.04' && matrix.config.r == 'release'
run: |
Rscript -e 'remotes::install_github("r-lib/covr@gh-actions")'
Rscript -e 'covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")'