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Update some scripts to install R packages from source, on arm64 images #195

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merged 3 commits into from
Jul 14, 2021
Merged

Update some scripts to install R packages from source, on arm64 images #195

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865849a
Changing the default repository for arm64 images
eitsupi Jun 29, 2021
b5469fc
Remove references to the CRAN env var from scripts
eitsupi Jun 29, 2021
65b7548
fix typo
eitsupi Jul 11, 2021
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5 changes: 5 additions & 0 deletions scripts/install_R.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,11 @@ CRAN=${CRAN:-https://cran.r-project.org}
## mechanism to force source installs if we're using RSPM
CRAN_SOURCE=${CRAN/"__linux__/$UBUNTU_VERSION/"/""}

## source install if using RSPM and arm64 image
if [ "$(uname -m)" = "aarch64" ]; then
CRAN=$CRAN_SOURCE
fi

export DEBIAN_FRONTEND=noninteractive

# Set up and install R
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6 changes: 3 additions & 3 deletions scripts/install_tidyverse.sh
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Expand Up @@ -18,7 +18,7 @@ apt-get update -qq && apt-get -y --no-install-recommends install \
unixodbc-dev && \
rm -rf /var/lib/apt/lists/*

install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
install2.r --error --skipinstalled -n $NCPUS \
tidyverse \
devtools \
rmarkdown \
Expand All @@ -27,7 +27,7 @@ install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
gert

## dplyr database backends
install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
install2.r --error --skipinstalled -n $NCPUS \
arrow \
dbplyr \
DBI \
Expand All @@ -40,6 +40,6 @@ install2.r --error --skipinstalled -r $CRAN -n $NCPUS \
fst

## a bridge to far? -- brings in another 60 packages
# install2.r --error --skipinstalled -r $CRAN -n $NCPUS tidymodels
# install2.r --error --skipinstalled -n $NCPUS tidymodels

rm -rf /tmp/downloaded_packages
6 changes: 3 additions & 3 deletions scripts/install_verse.sh
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Expand Up @@ -49,7 +49,7 @@ fi
# So: we can build the redland package bindings and then swap back to libcurl-openssl-dev... (ick)
# explicitly install runtime library sub-deps of librdf0-dev so they are not auto-removed.
apt-get install -y librdf0-dev
install2.r --error --skipinstalled -r $CRAN redland
install2.r --error --skipinstalled redland
apt-get install -y \
libcurl4-openssl-dev \
libxslt-dev \
Expand All @@ -70,8 +70,8 @@ wget "https://travis-bin.yihui.name/texlive-local.deb" \
## Install texlive
/rocker_scripts/install_texlive.sh

install2.r --error -r $CRAN --skipinstalled tinytex
install2.r --error --deps TRUE -r $CRAN --skipinstalled \
install2.r --error --skipinstalled tinytex
install2.r --error --deps TRUE --skipinstalled \
blogdown bookdown rticles rmdshower rJava xaringan

rm -rf /tmp/downloaded_packages
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