convert sample-config to YAML-derived dictionary with defaults #99
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| on: | |
| push: | |
| pull_request: | |
| name: snakemake-run | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Project | |
| uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| mamba-version: "*" | |
| channels: bioconda,conda-forge,defaults | |
| channel-priority: true | |
| activate-environment: scraps_conda | |
| environment-file: scraps_conda.yml | |
| - shell: bash -el {0} | |
| run: | | |
| snakemake -npr --configfile config.yaml | |