[ENH] Adds CLI for abagen.get_expression_data functionality
#82
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rmarkello
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In py35 if the path doesn't exist .resolve() throws a FileNotFoundError (but not in py36 or py37). Add a try/except block to catch the error and revert back to using os.path if pathlib can't be used.
Codecov Report
@@ Coverage Diff @@
## master #82 +/- ##
==========================================
- Coverage 89.52% 89.05% -0.48%
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Files 29 31 +2
Lines 1470 1562 +92
==========================================
+ Hits 1316 1391 +75
- Misses 154 171 +17
Continue to review full report at Codecov.
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Codecov Report
@@ Coverage Diff @@
## master #82 +/- ##
==========================================
+ Coverage 89.52% 90.06% +0.53%
==========================================
Files 29 31 +2
Lines 1470 1600 +130
==========================================
+ Hits 1316 1441 +125
- Misses 154 159 +5
Continue to review full report at Codecov.
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Including --save-donors, --save-counts, and --stdout
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The tests can't exactly be described as comprehensive, yet, so I really should work on beefing those up before merging... |
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Closes #70
Adds a command-line interface for the primary workflow available through the
abagen.get_expression_data()function so that users don't have to open a Python instance if they're more comfortable with shell scripting.To do: