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[ENH] Add norm_structures parameter #170

Merged
merged 3 commits into from
Mar 8, 2021
Merged

[ENH] Add norm_structures parameter #170

merged 3 commits into from
Mar 8, 2021

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rmarkello
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Adds norm_structures parameter to abagen.get_expression_data(), which controls whether gene normalization occurs globally (across all samples) or independently for different structural classes (i.e., cortex, subcortex/brainstem, cerebellum).

Controls whether normalization is performed independently for unique
structural classes (i.e., cortex, subcortex/brainstem, cerebellum)
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codecov bot commented Mar 8, 2021

Codecov Report

Merging #170 (6237601) into main (365ba8e) will decrease coverage by 0.48%.
The diff coverage is 51.85%.

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #170      +/-   ##
==========================================
- Coverage   96.80%   96.31%   -0.49%     
==========================================
  Files          37       37              
  Lines        2533     2553      +20     
==========================================
+ Hits         2452     2459       +7     
- Misses         81       94      +13     
Impacted Files Coverage Δ
abagen/tests/test_correct.py 92.62% <10.00%> (-7.38%) ⬇️
abagen/correct.py 95.51% <75.00%> (-2.45%) ⬇️
abagen/allen.py 93.57% <100.00%> (+0.04%) ⬆️

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@rmarkello rmarkello merged commit ce7e726 into main Mar 8, 2021
@rmarkello rmarkello deleted the norm_structures branch March 8, 2021 16:21
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