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Updated some parameters, added crown area and leaf area density tests.
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@rgknox
rgknox committed Nov 21, 2017
1 parent 5b7b20d commit aeebb2e
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1 change: 1 addition & 0 deletions Figures/README
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Use this folder to save and store plots.
127 changes: 90 additions & 37 deletions allom_params.xml
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Expand Up @@ -12,8 +12,25 @@
<f2l_ratio> 1.0 </f2l_ratio>
<agb_fraction> 0.65 </agb_fraction>

<!-- SAP NOTES -->
<!-- CARAPA GUINAESNSIS: -->
<!-- A_l/A_s = 0.017h + 0.066 -->

<!-- CD Allometries via MC -->
<!-- log(a) = -0.268 + 0.186*z -->
<!-- b = 0.655 + 0.035 * z -->
<!-- for WD=0.7: a = 0.8713 b = 0.6795 -->
<!-- CD = a d^b -->
<!-- CA = pi * CD^2/4 -->
<!-- CA = alpha*d^beta = pi/4 * a d^(2b) -->
<!-- MC: alpha = 0.68431684175 beta = 1.359 -->
<!-- if bleaf/CA = 0.17 kg/m2 -->
<!-- d2bl1_allom = 0.1163 -->

<!-- NAMING: XXX.h_YYY.a_ZZZ.l -->

<pfts>
<pft tag="pft 1">
<pft tag="Obrien.h_Salda.a_Salda.l">
<fates_allom_dbh_maxheight> 150.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 1 </fates_allom_hmode>
<fates_allom_amode> 1 </fates_allom_amode>
Expand Down Expand Up @@ -43,8 +60,7 @@
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</pft>

<!-- Martinez-Cano, Chave, Lescure, no height capping -->
<pft tag="pft 2">
<pft tag="MC.h_Chave.a_MC0.17.l">
<fates_allom_dbh_maxheight> 999.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 5 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
Expand All @@ -59,8 +75,8 @@
<fates_allom_agb2> 0.976 </fates_allom_agb2>
<fates_allom_agb3> -999.0 </fates_allom_agb3>
<fates_allom_agb4> -999.0 </fates_allom_agb4>
<fates_allom_d2bl1> 0.00873 </fates_allom_d2bl1>
<fates_allom_d2bl2> 2.136 </fates_allom_d2bl2>
<fates_allom_d2bl1> 0.23266 </fates_allom_d2bl1>
<fates_allom_d2bl2> 1.359 </fates_allom_d2bl2>
<fates_allom_d2bl3> -999.0 </fates_allom_d2bl3>
<fates_wood_density> 0.7 </fates_wood_density>
<fates_c2b> 2.0 </fates_c2b>
Expand All @@ -70,13 +86,18 @@
<fates_allom_l2fr> 1.0 </fates_allom_l2fr>
<fates_allom_agb_frac> 0.6 </fates_allom_agb_frac>
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
<fates_allom_d2ca_coefficient_min> 0.68431 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.80 </fates_allom_d2ca_coefficient_max>
</pft>

<!-- Martinez-Cano, Chave, Lescure, height capped-->
<pft tag="pft 3">
<fates_allom_dbh_maxheight> 80.0 </fates_allom_dbh_maxheight>


</pfts>

<old_pfts>
<!-- Martinez-Cano, Chave, Calvo-A, no capping (Carapa guianensis shade-t/evergreen )-->
<old_pft tag="MC.h_Chave.a_CA.l">
<fates_allom_dbh_maxheight> 999.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 5 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
<fates_allom_lmode> 3 </fates_allom_lmode>
Expand All @@ -90,8 +111,8 @@
<fates_allom_agb2> 0.976 </fates_allom_agb2>
<fates_allom_agb3> -999.0 </fates_allom_agb3>
<fates_allom_agb4> -999.0 </fates_allom_agb4>
<fates_allom_d2bl1> 0.00873 </fates_allom_d2bl1>
<fates_allom_d2bl2> 2.136 </fates_allom_d2bl2>
<fates_allom_d2bl1> 0.012 </fates_allom_d2bl1>
<fates_allom_d2bl2> 2.089 </fates_allom_d2bl2>
<fates_allom_d2bl3> -999.0 </fates_allom_d2bl3>
<fates_wood_density> 0.7 </fates_wood_density>
<fates_c2b> 2.0 </fates_c2b>
Expand All @@ -103,11 +124,11 @@
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</pft>
</old_pft>

<!-- Martinez-Cano, Chave, Calvo-A, no capping -->
<pft tag="pft 4">
<fates_allom_dbh_maxheight> 999.0 </fates_allom_dbh_maxheight>
<!-- Martinez-Cano, Chave, Calvo-A, capping -->
<old_pft tag="MC.h_Chave.a_CA(cap).l">
<fates_allom_dbh_maxheight> 80.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 5 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
<fates_allom_lmode> 3 </fates_allom_lmode>
Expand All @@ -134,20 +155,22 @@
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</pft>
</old_pft>

<!-- Martinez-Cano, Chave, Calvo-A, capping -->
<pft tag="pft 5">


<!-- Chave, Chave, Calvo-A, capping -->
<old_pft tag="Chave.h_Chave.a_CA(cap).l">
<fates_allom_dbh_maxheight> 80.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 5 </fates_allom_hmode>
<fates_allom_hmode> 4 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
<fates_allom_lmode> 3 </fates_allom_lmode>
<fates_allom_smode> 1 </fates_allom_smode>
<fates_allom_cmode> 1 </fates_allom_cmode>
<fates_allom_fmode> 1 </fates_allom_fmode>
<fates_allom_d2h1> 57.6 </fates_allom_d2h1>
<fates_allom_d2h2> 0.74 </fates_allom_d2h2>
<fates_allom_d2h3> 21.6 </fates_allom_d2h3>
<fates_allom_d2h1> 0.893 </fates_allom_d2h1>
<fates_allom_d2h2> 0.76 </fates_allom_d2h2>
<fates_allom_d2h3> -0.034 </fates_allom_d2h3>
<fates_allom_agb1> 0.0673 </fates_allom_agb1>
<fates_allom_agb2> 0.976 </fates_allom_agb2>
<fates_allom_agb3> -999.0 </fates_allom_agb3>
Expand All @@ -165,10 +188,10 @@
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</pft>
</old_pft>

<!-- Chave, Chave, Lescure, capping -->
<pft tag="pft 6">
<old_pft tag="Chave.h_Chave.a_Les(cap).l">
<fates_allom_dbh_maxheight> 80.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 4 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
Expand Down Expand Up @@ -196,26 +219,25 @@
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</pft>

<!-- Chave, Chave, Calvo-A, capping -->
<pft tag="pft 7">
</old_pft>
<!-- Martinez-Cano, Chave, Lescure, height capped-->
<old_pft tag="MC.h_Chave.a_Les(cap).l">
<fates_allom_dbh_maxheight> 80.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 4 </fates_allom_hmode>
<fates_allom_hmode> 5 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
<fates_allom_lmode> 3 </fates_allom_lmode>
<fates_allom_smode> 1 </fates_allom_smode>
<fates_allom_cmode> 1 </fates_allom_cmode>
<fates_allom_fmode> 1 </fates_allom_fmode>
<fates_allom_d2h1> 0.893 </fates_allom_d2h1>
<fates_allom_d2h2> 0.76 </fates_allom_d2h2>
<fates_allom_d2h3> -0.034 </fates_allom_d2h3>
<fates_allom_d2h1> 57.6 </fates_allom_d2h1>
<fates_allom_d2h2> 0.74 </fates_allom_d2h2>
<fates_allom_d2h3> 21.6 </fates_allom_d2h3>
<fates_allom_agb1> 0.0673 </fates_allom_agb1>
<fates_allom_agb2> 0.976 </fates_allom_agb2>
<fates_allom_agb3> -999.0 </fates_allom_agb3>
<fates_allom_agb4> -999.0 </fates_allom_agb4>
<fates_allom_d2bl1> 0.012 </fates_allom_d2bl1>
<fates_allom_d2bl2> 2.089 </fates_allom_d2bl2>
<fates_allom_d2bl1> 0.00873 </fates_allom_d2bl1>
<fates_allom_d2bl2> 2.136 </fates_allom_d2bl2>
<fates_allom_d2bl3> -999.0 </fates_allom_d2bl3>
<fates_wood_density> 0.7 </fates_wood_density>
<fates_c2b> 2.0 </fates_c2b>
Expand All @@ -227,8 +249,39 @@
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</pft>
</old_pft>

</pfts>
<!-- Martinez-Cano, Chave, Lescure, no height capping -->
<old_pft tag="MC.h_Chave.a_Les.l">
<fates_allom_dbh_maxheight> 999.0 </fates_allom_dbh_maxheight>
<fates_allom_hmode> 5 </fates_allom_hmode>
<fates_allom_amode> 3 </fates_allom_amode>
<fates_allom_lmode> 3 </fates_allom_lmode>
<fates_allom_smode> 1 </fates_allom_smode>
<fates_allom_cmode> 1 </fates_allom_cmode>
<fates_allom_fmode> 1 </fates_allom_fmode>
<fates_allom_d2h1> 57.6 </fates_allom_d2h1>
<fates_allom_d2h2> 0.74 </fates_allom_d2h2>
<fates_allom_d2h3> 21.6 </fates_allom_d2h3>
<fates_allom_agb1> 0.0673 </fates_allom_agb1>
<fates_allom_agb2> 0.976 </fates_allom_agb2>
<fates_allom_agb3> -999.0 </fates_allom_agb3>
<fates_allom_agb4> -999.0 </fates_allom_agb4>
<fates_allom_d2bl1> 0.00873 </fates_allom_d2bl1>
<fates_allom_d2bl2> 2.136 </fates_allom_d2bl2>
<fates_allom_d2bl3> -999.0 </fates_allom_d2bl3>
<fates_wood_density> 0.7 </fates_wood_density>
<fates_c2b> 2.0 </fates_c2b>
<fates_allom_latosa_int> 0.001 </fates_allom_latosa_int>
<fates_allom_latosa_slp> 0.0 </fates_allom_latosa_slp>
<fates_slatop> 0.012 </fates_slatop>
<fates_allom_l2fr> 1.0 </fates_allom_l2fr>
<fates_allom_agb_frac> 0.6 </fates_allom_agb_frac>
<fates_allom_blca_expnt_diff> 0.0 </fates_allom_blca_expnt_diff>
<fates_allom_d2ca_coefficient_min> 0.3381119 </fates_allom_d2ca_coefficient_min>
<fates_allom_d2ca_coefficient_max> 0.6568464 </fates_allom_d2ca_coefficient_max>
</old_pft>

</old_pfts>

</all>
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