Develop eq

[rburghol]

This contains a number of cosmetic/formatting changes (ruff) as well as enhancements to operational model that underlies special actions:

• Removes reliance on implicit global variable state defined on the base ModelObject class in favor of passing state in as an argument during object creation. (makes the code read more sensibly, as well as avoiding implicit globals, this is something that @austinorr and I discussed and ultimately held our nose on during last revision, but now is fixed)
  • Explicitly defines object containers for RCHRES segments on state during state_om_model_root_object() instead of relying on old implicit global state property
  • Updated previous operational model primitives to use state as create arguments (om_model_object,py, om_model_linkage.py, om_special_action.py, om_simtimer.py)
• Adds generic Equation object to operational model, which will underly next set of special actions (UVQUAN, UVNAME ...) as well as serving to add an operational element that can be used for a more robust operational framework that is not limited in ways that special actions are.
  • Simple arithmetic expressions with unlimited number of operands are supported (+, -, /, *)
  • Power operation e.g. x ^ y
  • Parentheses for execution hierarchy are fully supported
  • Any variable that is present in state_ix is available for use in equations.
  • Added tests/test10eq to verify execution of simple equation with +. This uses a json file with 3 equation objects that replicate the special action changes to SEDTRN from tests/test10specl, and in my desktop analysis the Equation approach replicated SPECL to 7 significant digits.
  • Note: @timcera I need help figuring out how to get a package, pyparsing, to install during testing. I have previously added things to environment.yml but that was unsuccessful this time around. Any tips would be appreciated.
    • Update: I got it to install by adding pyparsing to dependencies in pyporoject.toml, but not sure if I went about it correctly, please advise.
• Added basic timeseries retrieval and population from h5 into state/ts_ix. Tests forthcoming in future PR.

@PaulDudaRESPEC @timcera

[timcera]

The "pyparsing" entry in pyproject.toml is all that is needed to work for both pip and conda packages.

[rburghol]

@timcera thanks a bunch for the advice/review!

[PaulDudaRESPEC]

This looks great, @rburghol . Only (very minor) concern is that we might have lost a little of the auto-formatting that @timcera added.... I guess this will be a test to see if the merge picks up the formatting discrepancies.