remove filtering from nanoplot

replikation · Mar 5, 2021 · a02faa3 · a02faa3
1 parent f948a1f
commit a02faa3
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/workflows/process/nanoplot.nf b/workflows/process/nanoplot.nf
@@ -12,8 +12,6 @@ process nanoplot {
       tuple val(name), path("${name}_read_quality.txt"), path("*.png") optional true
     script:
       """
-      find . -name "${reads}" -type 'f' -size -1500k -delete
-
       NanoPlot -t ${task.cpus} --fastq ${reads} --title '${name}' --color darkslategrey --N50 --plots hex --loglength -f png --store
       NanoPlot -t ${task.cpus} --pickle NanoPlot-data.pickle --title '${name}' --color darkslategrey --N50 --plots hex --loglength -f pdf
       mv NanoPlot-report.html ${name}_read_quality_report.html
@@ -24,4 +22,4 @@ process nanoplot {
 /* Comments:
 We run nanoplot 2 times to get png and pdf files.
 The second time its done via the pickle file of the previous run, to save computing time
-*/
+*/