init concompra container

replikation · Aug 21, 2024 · 94c1d00 · 94c1d00
1 parent 0bf2ee7
commit 94c1d00
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Showing 3 changed files with 3 additions and 1 deletion.
diff --git a/configs/container.config b/configs/container.config
@@ -4,6 +4,7 @@ process {
     // nextclade container is maintained via params.defaultpangolin in nextflow.config
     withLabel:  artic       { container = 'nanozoo/artic:1.3.0-dev--784493e' }
     withLabel:  bwa         { container = 'nanozoo/bwa:0.7.17--d11c0a4' }
+    withLabel:  concompra   { container = 'rkimf1/concompra:0.0.0--f3c7699' }
     withLabel:  covarplot   { container = 'nanozoo/covarplot:0.0.2--2c6e300' }
     withLabel:  demultiplex { container = 'nanozoo/guppy_cpu:5.0.7-1--47b84be' }
     withLabel:  fastcov     { container = 'raverjay/fastcov:0.1.3--ba8c8cf6ae19' }

diff --git a/configs/local.config b/configs/local.config
@@ -3,6 +3,7 @@ process.executor = 'local'
 process {
     withLabel:  artic       { cpus = params.cores }
     withLabel:  bwa         { cpus = params.cores }
+    withLabel:  concompra   { cpus = params.cores }
     withLabel:  covarplot   { cpus = 1 }
     withLabel:  demultiplex { cpus = params.max_cores }
     withLabel:  fastcov     { cpus = params.cores }

diff --git a/configs/nodes.config b/configs/nodes.config
@@ -1,7 +1,7 @@
 process {
     withLabel:  artic       { cpus = 20; memory = '20 GB' }
     withLabel:  bwa         { cpus = 12; memory = '12 GB' }
-    withLabel:  covarplot   { cpus = 1; memory = '2 GB' }
+    withLabel:  concompra   { cpus = 14 memory = '4 GB' }
     withLabel:  demultiplex { cpus = 12; memory = '12 GB' }
     withLabel:  fastcov     { cpus = 4; memory = '8 GB' }
     withLabel:  fasttree    { cpus = 4; memory = '2 GB' }