tetrex_analysis

Experiments and Analyses done for publication of TetRex

runtimes was done with the cache (k5 regex 13 is slow) and has no complexity info
runtimes_and_complex was still done with cache but also contains complexity, index query count, and cache hit count
runtimes_no_cache was run without the cache (duh) and also has complexity info and index counts
runtimes_and_info was run without cache and also tracks complexity, index queries, pruneings, absorptions, and max pileups

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
data/RESULTS		data/RESULTS
variable_k		variable_k
README.md		README.md
all_metrics_analysis.ipynb		all_metrics_analysis.ipynb
analysis_lib.py		analysis_lib.py
complexity_analysis.ipynb		complexity_analysis.ipynb
deprecated_analyses.ipynb		deprecated_analyses.ipynb
no_cache_runtime_analysis.ipynb		no_cache_runtime_analysis.ipynb
pattern_length_analysis.ipynb		pattern_length_analysis.ipynb
simulated_dna_analysis.ipynb		simulated_dna_analysis.ipynb
swissprot_analysis.ipynb		swissprot_analysis.ipynb
visualization_eval.ipynb		visualization_eval.ipynb

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