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feat(snakemake): upgrade to Snakemake 8.27.1 #1129

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Run time

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Job	Run time
lint-shellcheck	3s
lint-commitlint	8s
docs-sphinx	5m 40s
lint-black	7s
lint-check-manifest	11s
lint-flake8	6s
lint-pydocstyle	7s
python-tests (3.8)	1m 24s
python-tests (3.9)	1m 28s
python-tests (3.10)	2m 32s
python-tests (3.11)	5m 16s
python-tests (3.12)	5m 42s
python-tests (3.13)	5m 42s
	28m 26s