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[WIP] HDBSCAN Clustering #3546

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[WIP] HDBSCAN Clustering #3546

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cjnolet
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@cjnolet cjnolet commented Feb 22, 2021 •
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Closes #3519

This PR reverts the removal of the HDBSCAN code from #3545 and continues to extend SLHC w/ the HDBSCAN code. Many of the changes in #3545 will appear in this PR until it is merged into cuml.

cjnolet and others added 30 commits December 15, 2020 12:33
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Checking in
43a8118
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Getting MST to return results
335e1f9
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Still trying to figure out why MST isn't returning expected results
8dc58ba
@cjnolet
Adding symmetrization to linkage
cef178a
@cjnolet
Fixing style
1f00cbf
@cjnolet
Merge branch 'branch-0.18' into fea-018-hdbscan
209733b
@cjnolet
Test is executing end-to-end, need to verify results
957192f
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Adding new symmetrizaiton
20e32e8
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Checking in
107b34d
@cjnolet
Merge branch 'branch-0.18' into fea-018-hdbscan
5dd72ba 
Conflicts:
	cpp/src_prims/sparse/coo.cuh
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Merge branch 'branch-0.18' into fea-018-hdbscan
3fe27c7
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Adding final cluster extraction
48fbd1a
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Fixing style
98dbf47
@cjnolet
Fixing symmetrizatio bug
567ab06
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Output matches sklearn
7635b25
@cjnolet
Updating include check for test
f3f45eb
@cjnolet
Fixing style
02125d6
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Checking in
c8f1a58
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Cleaning up logging
20f57a4
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Updating raft commit
3b08d79
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Fixing style
3e95e4b
@cjnolet
Fixing style
9525b80
@cjnolet
Cleaning up log statements & fixing small bug in inherit_labels
33b1948
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Adding test for outliers
2ad0580
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Merge branch 'branch-0.18' into fea-018-hdbscan
067ca4b
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Updating test cmakelists
c69d965
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Adding benchmark for linkage
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Changes from benchmarking
e608d2b
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Updating changes
0a9cf0d
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Checking in
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cjnolet added 16 commits February 24, 2021 10:51
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Merge branch 'branch-0.19' into imp-019-remove_sparse_prims
309ef27
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Merge branch 'imp-019-remove_sparse_prims' into imp-019-use_raft_fuse…
8a081d2 
…d_l2_nn
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Merge branch 'imp-019-use_raft_fused_l2_nn' into fea-019-slhc
4bf102b
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Updating raft hash so ci will build
70148d5
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Using raft hash to make CI build
e546579
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Moving cumlprims conda recipe back to minor_version
538891c
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Merge branch 'branch-0.19' into imp-019-use_raft_fused_l2_nn
3b43aad
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Updating style
279d631
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Updating raft hash to point to my branch until raft pr is merged
e0c9b1d
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Merge branch 'imp-19-use_raft_fused_l2_nn_2' into fea-019-slhc
8f0f709
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Removing tests that are no longer needed
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Merge branch 'imp-19-use_raft_fused_l2_nn_2' into fea-019-slhc
23893c3
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Merge branch 'branch-0.19' into fea-019-slhc
032887d
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Updating raft hash to branch-0.19
427ebc6
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Merge remote-tracking branch 'rapids/branch-0.19' into imp-19-use_raf…
72b3f10 
…t_fused_l2_nn_2
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Updating raft hash
2039567
@cjnolet cjnolet mentioned this pull request Mar 11, 2021
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@github-actions github-actions bot added the Cython / Python Cython or Python issue label Mar 15, 2021
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This PR has been labeled inactive-30d due to no recent activity in the past 30 days. Please close this PR if it is no longer required. Otherwise, please respond with a comment indicating any updates. This PR will be labeled inactive-90d if there is no activity in the next 60 days.

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cjnolet commented Apr 20, 2021

Ive created a new branch with these changes so I’m closing this one

@cjnolet cjnolet closed this Apr 20, 2021
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[FEA] HDBSCAN
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