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Sampling Performance Testing #3584

Merged
merged 490 commits into from
Jan 12, 2024
Merged

Sampling Performance Testing #3584

merged 490 commits into from
Jan 12, 2024

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alexbarghi-nv
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@alexbarghi-nv alexbarghi-nv commented May 19, 2023 •
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Adds performance benchmarking scripts for testing MNMG cuGraph GNN workflows.
This branch is the head branch for the cuGraph benchmarking effort. All work supporting the benchmarks should be merged into this branch. It will be merged into branch-24.02 once all features are ready.

Includes patches to cuGraph-PyG required for the latest DLFW container.

To-Do:

  • Refactor for branch-24.02
  • Add WholeGraph training portion Deferred to future PR (see Add WholeGraph Support alexbarghi-nv/cugraph#6)
  • Add WholeGraph generators Included in above
  • Support DGL Deferred to future PR
  • Use appropriate docker containers Deferred, waiting on DLFW release

Closes #3839

@alexbarghi-nv alexbarghi-nv added feature request New feature or request Blocked Cannot progress due to external reasons non-breaking Non-breaking change labels May 19, 2023
@alexbarghi-nv alexbarghi-nv self-assigned this May 19, 2023
@alexbarghi-nv alexbarghi-nv added this to the 23.08 milestone May 19, 2023
@BradReesWork BradReesWork changed the base branch from branch-23.06 to branch-23.08 May 30, 2023 12:55
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@BradReesWork BradReesWork modified the milestones: 23.08, 23.10 Jul 25, 2023
seunghwak and others added 17 commits August 2, 2023 23:22
@seunghwak
bug fix
c09bb25
@seunghwak
Merge branch 'branch-23.08' of github.com:rapidsai/cugraph into bug_mfg
4edb9ae
@alexbarghi-nv
Merge branch 'bug_mfg' of https://github.com/seunghwak/cugraph into p…
57fb8e5 
…erf-testing-v2
@alexbarghi-nv
add latest updates
3b95106
@alexbarghi-nv
Merge branch 'perf-testing-v2' of https://github.com/alexbarghi-nv/cu…
3269a4f 
…graph into perf-testing-v2
@seunghwak
bug fix (when edge list is empty)
3e009cd
@alexbarghi-nv
Merge branch 'branch-23.08' of https://github.com/rapidsai/cugraph in…
622a17a 
…to perf-testing-v2
@alexbarghi-nv
add latest updates
e4d7796
@alexbarghi-nv
revert cpp changes
a226a4e
@alexbarghi-nv
revert plc changes
5d3843f
@alexbarghi-nv
revert notebook changes
36464a9
@alexbarghi-nv
Revert logging change
c5a81c2
@alexbarghi-nv
correction for dataset name
95a72ab
@alexbarghi-nv
fix for empty batch issue
aebe742
@alexbarghi-nv
do merge
449984d
@alexbarghi-nv
bring in changes
bdaa22f
@alexbarghi-nv
remove redundant filter function
223dee3
@alexbarghi-nv alexbarghi-nv requested a review from a team as a code owner January 5, 2024 19:16
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/ok to test

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/ok to test

@alexbarghi-nv alexbarghi-nv marked this pull request as draft January 5, 2024 19:26
@alexbarghi-nv alexbarghi-nv marked this pull request as ready for review January 8, 2024 18:09
@alexbarghi-nv alexbarghi-nv mentioned this pull request Jan 8, 2024
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/ok to test

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/ok to test

VibhuJawa
VibhuJawa suggested changes Jan 9, 2024
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Requested minor changes, mostly looks good.

benchmarks/cugraph/standalone/bulk_sampling/README.md
the number of training epochs here. These are followed by the `REPLICATION_FACTOR` argument, which
can be used to create replications of the dataset for scale testing purposes.

The final two arguments are `FRAMEWORK` which can be either "cuGraphPyG" or "PyG", and `GPUS_PER_NODE`
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I assume we shall include "cuGraphDGL" here too.

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Yes

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in the next PR

benchmarks/cugraph/standalone/bulk_sampling/bench_cugraph_training.py Outdated Show resolved Hide resolved
benchmarks/cugraph/standalone/bulk_sampling/run_sampling.sh
SCRIPTS_DIR=$4
NUM_EPOCHS=$5

SAMPLES_DIR=/samples
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Assuming we are mounting this to the most performant path.

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Yes, it is up to us to set LOGS_DIR, SAMPLES_DIR, and DATASETS_DIR in run_train_job.sh correctly. In the srun command, those are mounted to /logs, /samples, and /datasets in the container that this script runs in.

mg_utils/wait_for_workers.py Show resolved Hide resolved
VibhuJawa
VibhuJawa approved these changes Jan 10, 2024
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LGTM

@alexbarghi-nv
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/ok to test

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/ok to test

rlratzel
rlratzel approved these changes Jan 11, 2024
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LGTM overall. I don't feel too strongly, but I noticed several places in the shell scripts that assume things about the file system (/datasets, etc.). We usually put those scripts in another repo (the repo containing our machine-specific nightly scripts, etc.) and not the open cugraph repo.

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LGTM overall. I don't feel too strongly, but I noticed several places in the shell scripts that assume things about the file system (/datasets, etc.). We usually put those scripts in another repo (the repo containing our machine-specific nightly scripts, etc.) and not the open cugraph repo.

The /datasets and /scripts directories are mounted to directories the user has to provide. They default to the current working directory (it creates folders there and mounts them). So we're not exposing any NVIDIA internal info.

ChuckHastings
ChuckHastings approved these changes Jan 11, 2024
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Not sure why we need to update the copyright on a file that wasn't otherwise updated... but OK.

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/merge

@rapids-bot rapids-bot bot merged commit c09db10 into rapidsai:branch-24.02 Jan 12, 2024
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rapids-bot bot pushed a commit that referenced this pull request Mar 11, 2024
@alexbarghi-nv
cuGraph-DGL and WholeGraph Performance Testing with Feature Store Per…
4f4be6e 
…formance Improvements (#4081)

Large-scale cuGraph-DGL performance testing scripts.  Also changes the DGL and PyG scripts to evaluate on all ranks and reuse the test samples, and adds support for benchmarking cuGraph-DGL/cuGraph-PyG with WholeGraph.

Updates `cuGraph.gnn.FeatureStore` and `cuGraph-PyG` for increased performance:
* Supporting passing in a WG embedding directly to cugraph.gnn.FeatureStore
* Simplifying how cuGraph-PyG handles filtering and using a cache to prevent repeatedly copying data between the device and host
* Fix bug in cugraph.gnn.FeatureStore where indexing with a gpu tensor would raise an exception, especially with WG
* Add a function to cugraph.gnn.FeatureStore to check where data is stored, which is used by cuGraph-PyG to prevent unnecessary d2h and h2d copies

Merge after #3584

Authors:
  - Alex Barghi (https://github.com/alexbarghi-nv)
  - Seunghwa Kang (https://github.com/seunghwak)
  - Vibhu Jawa (https://github.com/VibhuJawa)
  - Brad Rees (https://github.com/BradReesWork)

Approvers:
  - Vibhu Jawa (https://github.com/VibhuJawa)
  - Don Acosta (https://github.com/acostadon)
  - Brad Rees (https://github.com/BradReesWork)
  - Naim (https://github.com/naimnv)
  - Joseph Nke (https://github.com/jnke2016)

URL: #4081
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@ChuckHastings ChuckHastings ChuckHastings approved these changes

@VibhuJawa VibhuJawa VibhuJawa approved these changes

@rlratzel rlratzel rlratzel approved these changes

@acostadon acostadon Awaiting requested review from acostadon

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Add Reference CuGraphSAGE Implementation to cuGraph-PyG
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@alexbarghi-nv @rlratzel @VibhuJawa @ChuckHastings @BradReesWork @seunghwak