Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add support for STRUCT input to groupby #9024

Merged
merged 4 commits into from
Aug 26, 2021
Merged
Show file tree
Hide file tree
Changes from 1 commit
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
14 changes: 3 additions & 11 deletions cpp/include/cudf/detail/groupby/sort_helper.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -60,17 +60,7 @@ struct sort_groupby_helper {
*/
sort_groupby_helper(table_view const& keys,
null_policy include_null_keys = null_policy::EXCLUDE,
sorted keys_pre_sorted = sorted::NO)
: _keys(keys),
_num_keys(-1),
_keys_pre_sorted(keys_pre_sorted),
_include_null_keys(include_null_keys)
{
if (keys_pre_sorted == sorted::YES and include_null_keys == null_policy::EXCLUDE and
has_nulls(keys)) {
_keys_pre_sorted = sorted::NO;
}
};
sorted keys_pre_sorted = sorted::NO);

~sort_groupby_helper() = default;
sort_groupby_helper(sort_groupby_helper const&) = delete;
Expand Down Expand Up @@ -227,6 +217,8 @@ struct sort_groupby_helper {
column_ptr _unsorted_keys_labels; ///< Group labels for unsorted _keys
column_ptr _keys_bitmask_column; ///< Column representing rows with one or more nulls values
table_view _keys; ///< Input keys to sort by
table_view _unflattened_keys; ///< Input keys, unflattened and possibly nested
std::vector<column_ptr> _struct_null_vectors; ///< Null vectors for struct columns in _keys

index_vector_ptr
_group_offsets; ///< Indices into sorted _keys indicating starting index of each groups
Expand Down
11 changes: 10 additions & 1 deletion cpp/src/groupby/groupby.cu
Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@
#include <cudf/table/table_view.hpp>
#include <cudf/types.hpp>
#include <cudf/utilities/error.hpp>
#include <structs/utilities.hpp>

#include <rmm/cuda_stream_view.hpp>

Expand Down Expand Up @@ -62,6 +63,8 @@ std::pair<std::unique_ptr<table>, std::vector<aggregation_result>> groupby::disp
rmm::cuda_stream_view stream,
rmm::mr::device_memory_resource* mr)
{
using namespace cudf::structs::detail;

// If sort groupby has been called once on this groupby object, then
// always use sort groupby from now on. Because once keys are sorted,
// all the aggs that can be done by hash groupby are efficiently done by
Expand All @@ -70,7 +73,13 @@ std::pair<std::unique_ptr<table>, std::vector<aggregation_result>> groupby::disp
// satisfied with a hash implementation
if (_keys_are_sorted == sorted::NO and not _helper and
detail::hash::can_use_hash_groupby(_keys, requests)) {
return detail::hash::groupby(_keys, requests, _include_null_keys, stream, mr);
// Optionally flatten nested key columns.
auto [flattened_keys, _, __, ___] =
flatten_nested_columns(_keys, {}, {}, column_nullability::FORCE);
auto [grouped_keys, results] =
detail::hash::groupby(flattened_keys, requests, _include_null_keys, stream, mr);
return std::make_pair(unflatten_nested_columns(std::move(grouped_keys), _keys),
std::move(results));
} else {
return sort_aggregate(requests, stream, mr);
}
Expand Down
27 changes: 25 additions & 2 deletions cpp/src/groupby/sort/sort_helper.cu
Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@
#include <cudf/detail/sorting.hpp>
#include <cudf/table/row_operators.cuh>
#include <cudf/table/table_device_view.cuh>
#include <structs/utilities.hpp>

#include <rmm/cuda_stream_view.hpp>
#include <rmm/exec_policy.hpp>
Expand Down Expand Up @@ -88,6 +89,28 @@ namespace cudf {
namespace groupby {
namespace detail {
namespace sort {

sort_groupby_helper::sort_groupby_helper(table_view const& keys,
null_policy include_null_keys,
sorted keys_pre_sorted)
: _unflattened_keys(keys),
_num_keys(-1),
_keys_pre_sorted(keys_pre_sorted),
_include_null_keys(include_null_keys)
{
using namespace cudf::structs::detail;

auto [flattened_keys, _, __, struct_null_vectors] =
flatten_nested_columns(keys, {}, {}, column_nullability::FORCE);
_struct_null_vectors = std::move(struct_null_vectors);
_keys = flattened_keys;

if (keys_pre_sorted == sorted::YES and include_null_keys == null_policy::EXCLUDE and
mythrocks marked this conversation as resolved.
Show resolved Hide resolved
has_nulls(keys)) {
_keys_pre_sorted = sorted::NO;
}
};

size_type sort_groupby_helper::num_keys(rmm::cuda_stream_view stream)
{
if (_num_keys > -1) return _num_keys;
Expand Down Expand Up @@ -309,7 +332,7 @@ std::unique_ptr<table> sort_groupby_helper::unique_keys(rmm::cuda_stream_view st
auto gather_map_it = thrust::make_transform_iterator(
group_offsets(stream).begin(), [idx_data] __device__(size_type i) { return idx_data[i]; });

return cudf::detail::gather(_keys,
return cudf::detail::gather(_unflattened_keys,
gather_map_it,
gather_map_it + num_groups(stream),
out_of_bounds_policy::DONT_CHECK,
Expand All @@ -320,7 +343,7 @@ std::unique_ptr<table> sort_groupby_helper::unique_keys(rmm::cuda_stream_view st
std::unique_ptr<table> sort_groupby_helper::sorted_keys(rmm::cuda_stream_view stream,
rmm::mr::device_memory_resource* mr)
{
return cudf::detail::gather(_keys,
return cudf::detail::gather(_unflattened_keys,
key_sort_order(stream),
cudf::out_of_bounds_policy::DONT_CHECK,
cudf::detail::negative_index_policy::NOT_ALLOWED,
Expand Down
1 change: 1 addition & 0 deletions cpp/tests/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -80,6 +80,7 @@ ConfigureTest(GROUPBY_TEST
groupby/replace_nulls_tests.cpp
groupby/shift_tests.cpp
groupby/std_tests.cpp
groupby/structs_tests.cpp
groupby/sum_of_squares_tests.cpp
groupby/sum_scan_tests.cpp
groupby/sum_tests.cpp
Expand Down
Loading