Add in JNI APIs for scan, replace_nulls, group_by.scan, and group_by.replace_nulls [skip ci]

java/src/main/java/ai/rapids/cudf/ColumnView.java

@@ -412,6 +412,10 @@ public final ColumnVector replaceNulls(ColumnView replacements) {
     return new ColumnVector(replaceNullsColumn(getNativeView(), replacements.getNativeView()));
   }
 
+  public final ColumnVector replaceNulls(ReplacePolicy policy) {
+    return new ColumnVector(replaceNullsPolicy(getNativeView(), policy.isPreceding));
+  }
+
   /**
    * For a BOOL8 vector, computes a vector whose rows are selected from two other vectors
    * based on the boolean value of this vector in the corresponding row.
@@ -1384,17 +1388,50 @@ public final ColumnVector rollingWindow(RollingAggregation op, WindowOptions opt
   }
 
   /**
-   * Compute the cumulative sum/prefix sum of the values in this column.
-   * This is similar to a rolling window SUM with unbounded preceding and none following.
-   * Input values 1, 2, 3
-   * Output values 1, 3, 6
-   * This currently only works for long values that are not nullable as this is currently a
-   * very simple implementation. It may be expanded in the future if needed.
+   * Compute the prefix sum (aka cumulative sum) of the values in this column.
+   * This is just a convenience method for an inclusive scan with a SUM aggregation.
    */
   public final ColumnVector prefixSum() {
-    return new ColumnVector(prefixSum(getNativeView()));
+    return scan(Aggregation.sum());
+  }
+
+  /**
+   * Computes a scan for a column. This is very similar to a running window on the column.
+   * @param aggregation the aggregation to perform
+   * @param scanType should the scan be inclusive, include the current row, or exclusive.
+   * @param nullPolicy how should nulls be treated. Note that some aggregations also include a
+   *                   null policy too. Currently none of those aggregations are supported so
+   *                   it is undefined how they would interact with each other.
+   */
+  public final ColumnVector scan(Aggregation aggregation, ScanType scanType, NullPolicy nullPolicy) {
+    long nativeId = aggregation.createNativeInstance();
+    try {
+      return new ColumnVector(scan(getNativeView(), nativeId,
+          scanType.isInclusive, nullPolicy.includeNulls));
+    } finally {
+      Aggregation.close(nativeId);
+    }
   }
 
+  /**
+   * Computes a scan for a column that excludes nulls.
+   * @param aggregation the aggregation to perform
+   * @param scanType should the scan be inclusive, include the current row, or exclusive.
+   */
+  public final ColumnVector scan(Aggregation aggregation, ScanType scanType) {
+    return scan(aggregation, scanType, NullPolicy.EXCLUDE);
+  }
+
+  /**
+   * Computes an inclusive scan for a column that excludes nulls.
+   * @param aggregation the aggregation to perform
+   */
+  public final ColumnVector scan(Aggregation aggregation) {
+    return scan(aggregation, ScanType.INCLUSIVE, NullPolicy.EXCLUDE);
+  }
+
+
+
   /////////////////////////////////////////////////////////////////////////////
   // LOGICAL
   /////////////////////////////////////////////////////////////////////////////
@@ -3217,7 +3254,8 @@ private static native long rollingWindow(
       long preceding_col,
       long following_col);
 
-  private static native long prefixSum(long viewHandle) throws CudfException;
+  private static native long scan(long viewHandle, long aggregation,
+      boolean isInclusive, boolean includeNulls) throws CudfException;
 
   private static native long nansToNulls(long viewHandle) throws CudfException;
 
@@ -3227,6 +3265,8 @@ private static native long rollingWindow(
 
   private static native long replaceNullsColumn(long viewHandle, long replaceViewHandle) throws CudfException;
 
+  private static native long replaceNullsPolicy(long nativeView, boolean isPreceding) throws CudfException;
+
   private static native long ifElseVV(long predVec, long trueVec, long falseVec) throws CudfException;
 
   private static native long ifElseVS(long predVec, long trueVec, long falseScalar) throws CudfException;

java/src/main/java/ai/rapids/cudf/NaNEquality.java

@@ -18,11 +18,19 @@
 
 package ai.rapids.cudf;
 
-/*
- * This is analogous to the native 'nan_equality'.
+/**
+ * How should NaNs be compared in an operation. In floating point there are multiple
+ * different binary representations for NaN.
  */
 public enum NaNEquality {
+  /**
+   * No NaN representation is considered equal to any NaN representation, even for the
+   * exact same representation.
+   */
   UNEQUAL(false),
+  /**
+   * All representations of NaN are considered to be equal.
+   */
   ALL_EQUAL(true);
 
   NaNEquality(boolean nansEqual) {

java/src/main/java/ai/rapids/cudf/NullEquality.java

@@ -18,8 +18,8 @@
 
 package ai.rapids.cudf;
 
-/*
- * This is analogous to the native 'null_equality'.
+/**
+ * How should nulls be compared in an operation.
  */
 public enum NullEquality {
   UNEQUAL(false),

java/src/main/java/ai/rapids/cudf/NullPolicy.java

@@ -18,8 +18,8 @@
 
 package ai.rapids.cudf;
 
-/*
- * This is analogous to the native 'null_policy'.
+/**
+ * Specify whether to include nulls or exclude nulls in an operation.
  */
 public enum NullPolicy {
   EXCLUDE(false),

java/src/main/java/ai/rapids/cudf/ReplacePolicy.java

@@ -0,0 +1,46 @@
+/*
+ *
+ *  Copyright (c) 2021, NVIDIA CORPORATION.
+ *
+ *  Licensed under the Apache License, Version 2.0 (the "License");
+ *  you may not use this file except in compliance with the License.
+ *  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ *  Unless required by applicable law or agreed to in writing, software
+ *  distributed under the License is distributed on an "AS IS" BASIS,
+ *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ *  See the License for the specific language governing permissions and
+ *  limitations under the License.
+ *
+ */
+
+package ai.rapids.cudf;
+
+/**
+ * Policy to specify the position of replacement values relative to null rows.
+ */
+public enum ReplacePolicy {
+  /**
+   * The replacement value is the first non-null value preceding the null row.
+   */
+  PRECEDING(true),
+  /**
+   * The replacement value is the first non-null value following the null row.
+   */
+  FOLLOWING(false);
+
+  ReplacePolicy(boolean isPreceding) {
+    this.isPreceding = isPreceding;
+  }
+
+  final boolean isPreceding;
+
+  /**
+   * Indicate which column the replacement should happen on.
+   */
+  public ReplacePolicyWithColumn onColumn(int columnNumber) {
+    return new ReplacePolicyWithColumn(columnNumber, this);
+  }
+}

java/src/main/java/ai/rapids/cudf/ReplacePolicyWithColumn.java

@@ -0,0 +1,46 @@
+/*
+ *
+ *  Copyright (c) 2021, NVIDIA CORPORATION.
+ *
+ *  Licensed under the Apache License, Version 2.0 (the "License");
+ *  you may not use this file except in compliance with the License.
+ *  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ *  Unless required by applicable law or agreed to in writing, software
+ *  distributed under the License is distributed on an "AS IS" BASIS,
+ *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ *  See the License for the specific language governing permissions and
+ *  limitations under the License.
+ *
+ */
+
+package ai.rapids.cudf;
+
+/**
+ * A replacement policy for a specific column
+ */
+public class ReplacePolicyWithColumn {
+  final int column;
+  final ReplacePolicy policy;
+
+  ReplacePolicyWithColumn(int column, ReplacePolicy policy) {
+    this.column = column;
+    this.policy = policy;
+  }
+
+  @Override
+  public boolean equals(Object other) {
+    if (!(other instanceof ReplacePolicyWithColumn)) {
+      return false;
+    }
+    ReplacePolicyWithColumn ro = (ReplacePolicyWithColumn)other;
+    return this.column == ro.column && this.policy.equals(ro.policy);
+  }
+
+  @Override
+  public int hashCode() {
+    return 31 * column + policy.hashCode();
+  }
+}

java/src/main/java/ai/rapids/cudf/ScanType.java

@@ -0,0 +1,39 @@
+/*
+ *
+ *  Copyright (c) 2021, NVIDIA CORPORATION.
+ *
+ *  Licensed under the Apache License, Version 2.0 (the "License");
+ *  you may not use this file except in compliance with the License.
+ *  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ *  Unless required by applicable law or agreed to in writing, software
+ *  distributed under the License is distributed on an "AS IS" BASIS,
+ *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ *  See the License for the specific language governing permissions and
+ *  limitations under the License.
+ *
+ */
+
+package ai.rapids.cudf;
+
+/**
+ * Scan operation type.
+ */
+public enum ScanType {
+  /**
+   * Include the current row in the scan.
+   */
+  INCLUSIVE(true),
+  /**
+   * Exclude the current row from the scan.
+   */
+  EXCLUSIVE(false);
+
+  ScanType(boolean isInclusive) {
+    this.isInclusive = isInclusive;
+  }
+
+  final boolean isInclusive;
+}

java/src/main/java/ai/rapids/cudf/Table.java

@@ -28,14 +28,7 @@
 import java.math.BigDecimal;
 import java.math.RoundingMode;
 import java.nio.ByteBuffer;
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.TreeMap;
+import java.util.*;
 
 /**
  * Class to represent a collection of ColumnVectors and operations that can be performed on them
@@ -464,6 +457,17 @@ private static native long[] groupByAggregate(long inputTable, int[] keyIndices,
                                                 boolean keySorted, boolean[] keysDescending,
                                                 boolean[] keysNullSmallest) throws CudfException;
 
+  private static native long[] groupByScan(long inputTable, int[] keyIndices, int[] aggColumnsIndices,
+      long[] aggInstances, boolean ignoreNullKeys,
+      boolean keySorted, boolean[] keysDescending,
+      boolean[] keysNullSmallest) throws CudfException;
+
+  private static native long[] groupByReplaceNulls(long inputTable, int[] keyIndices,
+      int[] replaceColumnsIndices,
+      boolean[] isPreceding, boolean ignoreNullKeys,
+      boolean keySorted, boolean[] keysDescending,
+      boolean[] keysNullSmallest) throws CudfException;
+
   private static native long[] rollingWindowAggregate(
       long inputTable,
       int[] keyIndices,
@@ -2663,6 +2667,96 @@ public Table aggregateWindowsOverRanges(AggregationOverWindow... windowAggregate
       }
     }
 
+    public Table scan(AggregationOnColumn... aggregates) {
+      assert aggregates != null;
+
+      // To improve performance and memory we want to remove duplicate operations
+      // and also group the operations by column so hopefully cudf can do multiple aggregations
+      // in a single pass.
+
+      // Use a tree map to make debugging simpler (columns are all in the same order)
+      TreeMap<Integer, ColumnOps> groupedOps = new TreeMap<>();
+      // Total number of operations that will need to be done.
+      int keysLength = operation.indices.length;
+      int totalOps = 0;
+      for (int outputIndex = 0; outputIndex < aggregates.length; outputIndex++) {
+        AggregationOnColumn agg = aggregates[outputIndex];
+        ColumnOps ops = groupedOps.computeIfAbsent(agg.getColumnIndex(), (idx) -> new ColumnOps());
+        totalOps += ops.add(agg, outputIndex + keysLength);
+      }
+      int[] aggColumnIndexes = new int[totalOps];
+      long[] aggOperationInstances = new long[totalOps];
+      try {
+        int opIndex = 0;
+        for (Map.Entry<Integer, ColumnOps> entry: groupedOps.entrySet()) {
+          int columnIndex = entry.getKey();
+          for (Aggregation operation: entry.getValue().operations()) {
+            aggColumnIndexes[opIndex] = columnIndex;
+            aggOperationInstances[opIndex] = operation.createNativeInstance();
+            opIndex++;
+          }
+        }
+        assert opIndex == totalOps : opIndex + " == " + totalOps;
+
+        try (Table aggregate = new Table(groupByScan(
+            operation.table.nativeHandle,
+            operation.indices,
+            aggColumnIndexes,
+            aggOperationInstances,
+            groupByOptions.getIgnoreNullKeys(),
+            groupByOptions.getKeySorted(),
+            groupByOptions.getKeysDescending(),
+            groupByOptions.getKeysNullSmallest()))) {
+          // prepare the final table
+          ColumnVector[] finalCols = new ColumnVector[keysLength + aggregates.length];
+
+          // get the key columns
+          for (int aggIndex = 0; aggIndex < keysLength; aggIndex++) {
+            finalCols[aggIndex] = aggregate.getColumn(aggIndex);
+          }
+
+          int inputColumn = keysLength;
+          // Now get the aggregation columns
+          for (ColumnOps ops: groupedOps.values()) {
+            for (List<Integer> indices: ops.outputIndices()) {
+              for (int outIndex: indices) {
+                finalCols[outIndex] = aggregate.getColumn(inputColumn);
+              }
+              inputColumn++;
+            }
+          }
+          return new Table(finalCols);
+        }
+      } finally {
+        Aggregation.close(aggOperationInstances);
+      }
+    }
+
+    public Table replaceNulls(ReplacePolicyWithColumn... replacements) {
+      assert replacements != null;
+
+      // TODO in the future perhaps to improve performance and memory we want to
+      //  remove duplicate operations.
+
+      boolean[] isPreceding = new boolean[replacements.length];
+      int [] columnIndexes = new int[replacements.length];
+
+      for (int index = 0; index < replacements.length; index++) {
+        isPreceding[index] = replacements[index].policy.isPreceding;
+        columnIndexes[index] = replacements[index].column;
+      }
+
+      return new Table(groupByReplaceNulls(
+          operation.table.nativeHandle,
+          operation.indices,
+          columnIndexes,
+          isPreceding,
+          groupByOptions.getIgnoreNullKeys(),
+          groupByOptions.getKeySorted(),
+          groupByOptions.getKeysDescending(),
+          groupByOptions.getKeysNullSmallest()));
+    }
+
     /**
      * Splits the groups in a single table into separate tables according to the grouping keys.
      * Each split table represents a single group.