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Refactor dictionary support for reductions any/all #7242

Merged
merged 10 commits into from
Feb 8, 2021
1 change: 1 addition & 0 deletions cpp/benchmarks/CMakeLists.txt
Original file line number Diff line number Diff line change
Expand Up @@ -182,6 +182,7 @@ ConfigureBench(TYPE_DISPATCHER_BENCH "${TD_BENCH_SRC}")

set(REDUCTION_BENCH_SRC
"${CMAKE_CURRENT_SOURCE_DIR}/reduction/anyall_benchmark.cpp"
"${CMAKE_CURRENT_SOURCE_DIR}/reduction/dictionary_benchmark.cpp"
"${CMAKE_CURRENT_SOURCE_DIR}/reduction/reduce_benchmark.cpp"
"${CMAKE_CURRENT_SOURCE_DIR}/reduction/minmax_benchmark.cpp")

Expand Down
7 changes: 3 additions & 4 deletions cpp/benchmarks/reduction/anyall_benchmark.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,6 @@
#include <cudf_test/base_fixture.hpp>
#include <cudf_test/column_wrapper.hpp>

#include <memory>
#include <random>

class Reduction : public cudf::benchmark {
Expand All @@ -33,18 +32,18 @@ void BM_reduction_anyall(benchmark::State& state, std::unique_ptr<cudf::aggregat
{
const cudf::size_type column_size{static_cast<cudf::size_type>(state.range(0))};

cudf::test::UniformRandomGenerator<long> rand_gen(0, 100);
cudf::test::UniformRandomGenerator<long> rand_gen(
(agg->kind == cudf::aggregation::ALL ? 1 : 0), (agg->kind == cudf::aggregation::ANY ? 0 : 100));
auto data_it = cudf::detail::make_counting_transform_iterator(
0, [&rand_gen](cudf::size_type row) { return rand_gen.generate(); });
cudf::test::fixed_width_column_wrapper<type, typename decltype(data_it)::value_type> values(
data_it, data_it + column_size);

auto input_column = cudf::column_view(values);
cudf::data_type output_dtype{cudf::type_id::BOOL8};

for (auto _ : state) {
cuda_event_timer timer(state, true);
auto result = cudf::reduce(input_column, agg, output_dtype);
auto result = cudf::reduce(values, agg, output_dtype);
}
}

Expand Down
84 changes: 84 additions & 0 deletions cpp/benchmarks/reduction/dictionary_benchmark.cpp
Original file line number Diff line number Diff line change
@@ -0,0 +1,84 @@
/*
* Copyright (c) 2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/

#include <benchmarks/fixture/benchmark_fixture.hpp>
#include <benchmarks/synchronization/synchronization.hpp>
#include <cudf/column/column_view.hpp>
#include <cudf/reduction.hpp>
#include <cudf/types.hpp>
#include <cudf_test/base_fixture.hpp>
#include <cudf_test/column_wrapper.hpp>

#include <random>

class ReductionDictionary : public cudf::benchmark {
};

template <typename T>
void BM_reduction_dictionary(benchmark::State& state, std::unique_ptr<cudf::aggregation> const& agg)
{
const cudf::size_type column_size{static_cast<cudf::size_type>(state.range(0))};

cudf::test::UniformRandomGenerator<long> rand_gen(
(agg->kind == cudf::aggregation::ALL ? 1 : 0), (agg->kind == cudf::aggregation::ANY ? 0 : 100));
auto data_it = cudf::detail::make_counting_transform_iterator(
0, [&rand_gen](cudf::size_type row) { return rand_gen.generate(); });
cudf::test::dictionary_column_wrapper<T, typename decltype(data_it)::value_type> values(
data_it, data_it + column_size);

cudf::data_type output_dtype = [&] {
if (agg->kind == cudf::aggregation::ANY || agg->kind == cudf::aggregation::ALL)
return cudf::data_type{cudf::type_id::BOOL8};
if (agg->kind == cudf::aggregation::MEAN) return cudf::data_type{cudf::type_id::FLOAT64};
return cudf::data_type{cudf::type_to_id<T>()};
}();

for (auto _ : state) {
cuda_event_timer timer(state, true);
auto result = cudf::reduce(values, agg, output_dtype);
}
}

#define concat(a, b, c) a##b##c
#define get_agg(op) concat(cudf::make_, op, _aggregation())

// TYPE, OP
#define RBM_BENCHMARK_DEFINE(name, type, aggregation) \
BENCHMARK_DEFINE_F(ReductionDictionary, name)(::benchmark::State & state) \
{ \
BM_reduction_dictionary<type>(state, get_agg(aggregation)); \
} \
BENCHMARK_REGISTER_F(ReductionDictionary, name) \
->UseManualTime() \
->Arg(10000) /* 10k */ \
->Arg(100000) /* 100k */ \
->Arg(1000000) /* 1M */ \
->Arg(10000000) /* 10M */ \
->Arg(100000000); /* 100M */

#define REDUCE_BENCHMARK_DEFINE(type, aggregation) \
RBM_BENCHMARK_DEFINE(concat(type, _, aggregation), type, aggregation)

REDUCE_BENCHMARK_DEFINE(int32_t, all);
REDUCE_BENCHMARK_DEFINE(float, all);
REDUCE_BENCHMARK_DEFINE(int32_t, any);
REDUCE_BENCHMARK_DEFINE(float, any);
REDUCE_BENCHMARK_DEFINE(int32_t, min);
REDUCE_BENCHMARK_DEFINE(float, min);
REDUCE_BENCHMARK_DEFINE(int32_t, max);
REDUCE_BENCHMARK_DEFINE(float, max);
REDUCE_BENCHMARK_DEFINE(int32_t, mean);
REDUCE_BENCHMARK_DEFINE(float, mean);
20 changes: 11 additions & 9 deletions cpp/include/cudf/dictionary/detail/iterator.cuh
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
/*
* Copyright (c) 2020, NVIDIA CORPORATION.
* Copyright (c) 2020-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -66,27 +66,28 @@ auto make_dictionary_iterator(column_device_view const& dictionary_column)
* @brief Accessor functor for returning a dictionary pair iterator.
*
* @tparam KeyType The type of the dictionary's key element.
* @tparam has_nulls Set to `true` if `d_dictionary` has nulls.
*
* @throw cudf::logic_error if `has_nulls==true` and `d_dictionary` is not nullable.
*/
template <typename KeyType, bool has_nulls>
template <typename KeyType>
struct dictionary_access_pair_fn {
dictionary_access_pair_fn(column_device_view const& d_dictionary) : d_dictionary{d_dictionary}
dictionary_access_pair_fn(column_device_view const& d_dictionary, bool has_nulls = true)
: d_dictionary{d_dictionary}, has_nulls{has_nulls}
{
if (has_nulls) { CUDF_EXPECTS(d_dictionary.nullable(), "unexpected non-nullable column"); }
}

__device__ thrust::pair<KeyType, bool> operator()(size_type idx) const
{
if (has_nulls && d_dictionary.is_null(idx)) return {KeyType{}, false};
auto keys = d_dictionary.child(1);
auto keys = d_dictionary.child(dictionary_column_view::keys_column_index);
return {keys.element<KeyType>(static_cast<size_type>(d_dictionary.element<dictionary32>(idx))),
true};
};

private:
column_device_view const d_dictionary;
bool has_nulls;
};

/**
Expand All @@ -100,19 +101,20 @@ struct dictionary_access_pair_fn {
* @throw cudf::logic_error if `dictionary_column` is not a dictionary column.
*
* @tparam KeyType The type of the dictionary's key element.
* @tparam has_nulls Set to `true` if the dictionary_column has nulls.
*
* @param dictionary_column The dictionary device view to iterate.
* @param has_nulls Set to `true` if the `dictionary_column` has nulls.
* @return Pair iterator with `{value,valid}`
*/
template <typename KeyType, bool has_nulls>
auto make_dictionary_pair_iterator(column_device_view const& dictionary_column)
template <typename KeyType>
auto make_dictionary_pair_iterator(column_device_view const& dictionary_column,
bool has_nulls = true)
{
CUDF_EXPECTS(is_dictionary(dictionary_column.type()),
"Dictionary iterator is only for dictionary columns");
return thrust::make_transform_iterator(
thrust::make_counting_iterator<size_type>(0),
dictionary_access_pair_fn<KeyType, has_nulls>{dictionary_column});
dictionary_access_pair_fn<KeyType>{dictionary_column, has_nulls});
}

} // namespace detail
Expand Down
66 changes: 62 additions & 4 deletions cpp/src/reductions/all.cu
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
/*
* Copyright (c) 2019-2020, NVIDIA CORPORATION.
* Copyright (c) 2019-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
Expand All @@ -15,11 +15,65 @@
*/

#include <cudf/detail/reduction_functions.hpp>
#include <cudf/detail/utilities/device_atomics.cuh>
#include <cudf/dictionary/dictionary_column_view.hpp>
#include <reductions/simple.cuh>

namespace cudf {
namespace reduction {
namespace detail {
namespace {

/**
* @brief Compute reduction all() for dictionary columns.
*
* This compiles 10x faster than using thrust::reduce or the
* cudf::simple::reduction::detail::reduce utility.
* Both of these use the CUB DeviceReduce which aggressively inlines
* the input iterator logic.
*/
struct all_fn {
template <typename Iterator>
struct all_true_fn {
__device__ void operator()(size_type idx)
{
if (*d_result && (iter[idx] != *d_result)) atomicAnd(d_result, false);
}
Iterator iter;
bool* d_result;
};

template <typename T, std::enable_if_t<std::is_arithmetic<T>::value>* = nullptr>
std::unique_ptr<scalar> operator()(column_view const& input,
rmm::cuda_stream_view stream,
rmm::mr::device_memory_resource* mr)
{
auto const d_dict = cudf::column_device_view::create(input, stream);
auto const iter = [&] {
auto null_iter =
cudf::reduction::op::min{}.template get_null_replacing_element_transformer<bool>();
auto pair_iter =
cudf::dictionary::detail::make_dictionary_pair_iterator<T>(*d_dict, input.has_nulls());
return thrust::make_transform_iterator(pair_iter, null_iter);
}();
auto result = std::make_unique<numeric_scalar<bool>>(true, true, stream, mr);
thrust::for_each_n(rmm::exec_policy(stream),
thrust::make_counting_iterator<size_type>(0),
input.size(),
all_true_fn<decltype(iter)>{iter, result->data()});
return result;
}
template <typename T, std::enable_if_t<!std::is_arithmetic<T>::value>* = nullptr>
std::unique_ptr<scalar> operator()(column_view const&,
rmm::cuda_stream_view,
rmm::mr::device_memory_resource*)
{
CUDF_FAIL("Unexpected key type for dictionary in reduction all()");
}
};

} // namespace
} // namespace detail

std::unique_ptr<cudf::scalar> all(column_view const& col,
cudf::data_type const output_dtype,
Expand All @@ -28,9 +82,13 @@ std::unique_ptr<cudf::scalar> all(column_view const& col,
{
CUDF_EXPECTS(output_dtype == cudf::data_type(cudf::type_id::BOOL8),
"all() operation can be applied with output type `BOOL8` only");
auto const dispatch_type =
cudf::is_dictionary(col.type()) ? dictionary_column_view(col).keys().type() : col.type();
return cudf::type_dispatcher(dispatch_type,

if (cudf::is_dictionary(col.type())) {
return cudf::type_dispatcher(
dictionary_column_view(col).keys().type(), detail::all_fn{}, col, stream, mr);
}
// dispatch for non-dictionary types
return cudf::type_dispatcher(col.type(),
simple::bool_result_element_dispatcher<cudf::reduction::op::min>{},
col,
stream,
Expand Down
66 changes: 62 additions & 4 deletions cpp/src/reductions/any.cu
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
/*
* Copyright (c) 2019-2020, NVIDIA CORPORATION.
* Copyright (c) 2019-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
Expand All @@ -15,11 +15,65 @@
*/

#include <cudf/detail/reduction_functions.hpp>
#include <cudf/detail/utilities/device_atomics.cuh>
#include <cudf/dictionary/dictionary_column_view.hpp>
#include <reductions/simple.cuh>

namespace cudf {
namespace reduction {
namespace detail {
namespace {

/**
* @brief Compute reduction any() for dictionary columns.
*
* This compiles 10x faster than using thrust::reduce or the
* cudf::simple::reduction::detail::reduce utility.
* Both of these use the CUB DeviceReduce which aggressively inlines
* the input iterator logic.
*/
struct any_fn {
template <typename Iterator>
struct any_true_fn {
__device__ void operator()(size_type idx)
{
if (!*d_result && (iter[idx] != *d_result)) atomicOr(d_result, true);
}
Iterator iter;
bool* d_result;
};

template <typename T, std::enable_if_t<std::is_arithmetic<T>::value>* = nullptr>
std::unique_ptr<scalar> operator()(column_view const& input,
rmm::cuda_stream_view stream,
rmm::mr::device_memory_resource* mr)
{
auto const d_dict = cudf::column_device_view::create(input, stream);
auto const iter = [&] {
auto null_iter =
cudf::reduction::op::max{}.template get_null_replacing_element_transformer<bool>();
auto pair_iter =
cudf::dictionary::detail::make_dictionary_pair_iterator<T>(*d_dict, input.has_nulls());
return thrust::make_transform_iterator(pair_iter, null_iter);
}();
auto result = std::make_unique<numeric_scalar<bool>>(false, true, stream, mr);
thrust::for_each_n(rmm::exec_policy(stream),
thrust::make_counting_iterator<size_type>(0),
input.size(),
any_true_fn<decltype(iter)>{iter, result->data()});
return result;
}
template <typename T, std::enable_if_t<!std::is_arithmetic<T>::value>* = nullptr>
std::unique_ptr<scalar> operator()(column_view const&,
rmm::cuda_stream_view,
rmm::mr::device_memory_resource*)
{
CUDF_FAIL("Unexpected key type for dictionary in reduction any()");
}
};

} // namespace
} // namespace detail

std::unique_ptr<cudf::scalar> any(column_view const& col,
cudf::data_type const output_dtype,
Expand All @@ -28,9 +82,13 @@ std::unique_ptr<cudf::scalar> any(column_view const& col,
{
CUDF_EXPECTS(output_dtype == cudf::data_type(cudf::type_id::BOOL8),
"any() operation can be applied with output type `bool8` only");
auto const dispatch_type =
cudf::is_dictionary(col.type()) ? dictionary_column_view(col).keys().type() : col.type();
return cudf::type_dispatcher(dispatch_type,

if (cudf::is_dictionary(col.type())) {
return cudf::type_dispatcher(
dictionary_column_view(col).keys().type(), detail::any_fn{}, col, stream, mr);
}
// dispatch for non-dictionary types
return cudf::type_dispatcher(col.type(),
simple::bool_result_element_dispatcher<cudf::reduction::op::max>{},
col,
stream,
Expand Down
20 changes: 6 additions & 14 deletions cpp/src/reductions/compound.cuh
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
/*
* Copyright (c) 2019-2020, NVIDIA CORPORATION.
* Copyright (c) 2019-2021, NVIDIA CORPORATION.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
Expand Down Expand Up @@ -70,19 +70,11 @@ std::unique_ptr<scalar> compound_reduction(column_view const& col,
it, col.size(), compound_op, valid_count, ddof, stream, mr);
}
} else {
if (col.has_nulls()) {
auto it = thrust::make_transform_iterator(
cudf::dictionary::detail::make_dictionary_pair_iterator<ElementType, true>(*dcol),
compound_op.template get_null_replacing_element_transformer<ResultType>());
result = detail::reduce<Op, decltype(it), ResultType>(
it, col.size(), compound_op, valid_count, ddof, stream, mr);
} else {
auto it = thrust::make_transform_iterator(
cudf::dictionary::detail::make_dictionary_iterator<ElementType>(*dcol),
compound_op.template get_element_transformer<ResultType>());
result = detail::reduce<Op, decltype(it), ResultType>(
it, col.size(), compound_op, valid_count, ddof, stream, mr);
}
auto it = thrust::make_transform_iterator(
cudf::dictionary::detail::make_dictionary_pair_iterator<ElementType>(*dcol, col.has_nulls()),
compound_op.template get_null_replacing_element_transformer<ResultType>());
result = detail::reduce<Op, decltype(it), ResultType>(
it, col.size(), compound_op, valid_count, ddof, stream, mr);
}

// set scalar is valid
Expand Down
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