Updating book. Many changes.

rafalab · Dec 27, 2024 · 44c888e · 44c888e
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diff --git a/.gitignore b/.gitignore
@@ -15,4 +15,5 @@ crossref.sh
 cover.png
 /.quarto/
 *.tex
-*.pdf
+*.pdf
+notes.txt
diff --git a/docs/highdim/dimension-reduction.html b/docs/highdim/dimension-reduction.html
diff --git a/...im/dimension-reduction_files/figure-html/illustrate-pca-twin-heights-iris-1.png b/...im/dimension-reduction_files/figure-html/illustrate-pca-twin-heights-iris-1.png
diff --git a/docs/highdim/dimension-reduction_files/figure-html/mnist-pca-last,-1.png b/docs/highdim/dimension-reduction_files/figure-html/mnist-pca-last,-1.png
diff --git a/docs/highdim/intro-highdim.html b/docs/highdim/intro-highdim.html
diff --git a/docs/highdim/linear-algebra.html b/docs/highdim/linear-algebra.html
diff --git a/docs/highdim/matrices-in-R.html b/docs/highdim/matrices-in-R.html
diff --git a/docs/highdim/matrix-factorization.html b/docs/highdim/matrix-factorization.html
diff --git a/docs/highdim/matrix-factorization_files/figure-html/movie-cor-1.png b/docs/highdim/matrix-factorization_files/figure-html/movie-cor-1.png
diff --git a/docs/highdim/matrix-factorization_files/figure-html/movies-pca-1.png b/docs/highdim/matrix-factorization_files/figure-html/movies-pca-1.png
diff --git a/docs/highdim/regularization.html b/docs/highdim/regularization.html
diff --git a/docs/highdim/regularization_files/figure-html/movie-id-and-user-hists-1.png b/docs/highdim/regularization_files/figure-html/movie-id-and-user-hists-1.png
diff --git a/docs/highdim/regularization_files/figure-html/sparsity-of-movie-recs-1.png b/docs/highdim/regularization_files/figure-html/sparsity-of-movie-recs-1.png
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/inference/bayes.html b/docs/inference/bayes.html
diff --git a/docs/inference/bootstrap.html b/docs/inference/bootstrap.html
diff --git a/docs/inference/clt.html b/docs/inference/clt.html
diff --git a/docs/inference/clt_files/figure-html/normal-approximation-for-polls-1.png b/docs/inference/clt_files/figure-html/normal-approximation-for-polls-1.png
diff --git a/docs/inference/confidence-intervals.html b/docs/inference/confidence-intervals.html
diff --git a/docs/inference/hierarchical-models.html b/docs/inference/hierarchical-models.html
diff --git a/...chical-models_files/figure-html/comparison-forecast-with-and-without-bias-1.png b/...chical-models_files/figure-html/comparison-forecast-with-and-without-bias-1.png
diff --git a/docs/inference/hierarchical-models_files/figure-html/time-trend-estimate-1.png b/docs/inference/hierarchical-models_files/figure-html/time-trend-estimate-1.png
diff --git a/...erarchical-models_files/figure-html/time-trend-estimate-several-pollsters-1.png b/...erarchical-models_files/figure-html/time-trend-estimate-several-pollsters-1.png
diff --git a/docs/inference/hypothesis-testing.html b/docs/inference/hypothesis-testing.html
diff --git a/docs/inference/intro-inference.html b/docs/inference/intro-inference.html
diff --git a/docs/inference/models.html b/docs/inference/models.html
diff --git a/docs/inference/models_files/figure-html/confidence-coverage-2008-election-1.png b/docs/inference/models_files/figure-html/confidence-coverage-2008-election-1.png
diff --git a/docs/inference/models_files/figure-html/simulated-polls-1.png b/docs/inference/models_files/figure-html/simulated-polls-1.png
diff --git a/docs/inference/parameters-estimates.html b/docs/inference/parameters-estimates.html
diff --git a/docs/intro.html b/docs/intro.html
diff --git a/docs/linear-models/association-not-causation.html b/docs/linear-models/association-not-causation.html
diff --git a/docs/linear-models/association-not-causation_files/figure-html/dredging-1.png b/docs/linear-models/association-not-causation_files/figure-html/dredging-1.png
diff --git a/.../linear-models/association-not-causation_files/figure-html/null-corr-hist-1.png b/.../linear-models/association-not-causation_files/figure-html/null-corr-hist-1.png
diff --git a/docs/linear-models/association-tests.html b/docs/linear-models/association-tests.html
diff --git a/docs/linear-models/intro-to-linear-models.html b/docs/linear-models/intro-to-linear-models.html
diff --git a/docs/linear-models/measurement-error-models.html b/docs/linear-models/measurement-error-models.html
diff --git a/...near-models/measurement-error-models_files/figure-html/falling-object-fit-1.png b/...near-models/measurement-error-models_files/figure-html/falling-object-fit-1.png
diff --git a/docs/linear-models/measurement-error-models_files/figure-html/gravity-1.png b/docs/linear-models/measurement-error-models_files/figure-html/gravity-1.png
diff --git a/docs/linear-models/multivariate-regression.html b/docs/linear-models/multivariate-regression.html
diff --git a/docs/linear-models/multivariate-regression_files/figure-html/bb-vs-hrs-1.png b/docs/linear-models/multivariate-regression_files/figure-html/bb-vs-hrs-1.png
diff --git a/...odels/multivariate-regression_files/figure-html/hr-versus-runs-regression-1.png b/...odels/multivariate-regression_files/figure-html/hr-versus-runs-regression-1.png
diff --git a/.../multivariate-regression_files/figure-html/hr-versus-runs-regression-easy-1.png b/.../multivariate-regression_files/figure-html/hr-versus-runs-regression-easy-1.png
diff --git a/...models/multivariate-regression_files/figure-html/predicted-runs-vs-salary-1.png b/...models/multivariate-regression_files/figure-html/predicted-runs-vs-salary-1.png
diff --git a/docs/linear-models/multivariate-regression_files/figure-html/runs-vs-bb-1.png b/docs/linear-models/multivariate-regression_files/figure-html/runs-vs-bb-1.png
diff --git a/...-models/multivariate-regression_files/figure-html/runs-vs-bb-by-hr-strata-1.png b/...-models/multivariate-regression_files/figure-html/runs-vs-bb-by-hr-strata-1.png
diff --git a/docs/linear-models/multivariate-regression_files/figure-html/runs-vs-hrs-1.png b/docs/linear-models/multivariate-regression_files/figure-html/runs-vs-hrs-1.png
diff --git a/docs/linear-models/multivariate-regression_files/figure-html/runs-vs-sb-1.png b/docs/linear-models/multivariate-regression_files/figure-html/runs-vs-sb-1.png
diff --git a/docs/linear-models/regression.html b/docs/linear-models/regression.html
diff --git a/docs/linear-models/regression_files/figure-html/diagnostic-plots-1.png b/docs/linear-models/regression_files/figure-html/diagnostic-plots-1.png
diff --git a/docs/linear-models/treatment-effect-models.html b/docs/linear-models/treatment-effect-models.html
diff --git a/docs/ml/algorithms.html b/docs/ml/algorithms.html
diff --git a/docs/ml/algorithms_files/figure-html/more-trees-better-fit-1.png b/docs/ml/algorithms_files/figure-html/more-trees-better-fit-1.png
diff --git a/docs/ml/algorithms_files/figure-html/polls-2008-final-fit-1.png b/docs/ml/algorithms_files/figure-html/polls-2008-final-fit-1.png
diff --git a/docs/ml/algorithms_files/figure-html/polls-2008-rf-fit-1.png b/docs/ml/algorithms_files/figure-html/polls-2008-rf-fit-1.png
diff --git a/docs/ml/clustering.html b/docs/ml/clustering.html
diff --git a/docs/ml/clustering_files/figure-html/dendrogram-1.png b/docs/ml/clustering_files/figure-html/dendrogram-1.png
diff --git a/docs/ml/conditionals.html b/docs/ml/conditionals.html
diff --git a/docs/ml/evaluation-metrics.html b/docs/ml/evaluation-metrics.html
diff --git a/docs/ml/evaluation-metrics_files/figure-html/roc-3-1.png b/docs/ml/evaluation-metrics_files/figure-html/roc-3-1.png
diff --git a/docs/ml/intro-ml.html b/docs/ml/intro-ml.html
diff --git a/docs/ml/ml-in-practice.html b/docs/ml/ml-in-practice.html
diff --git a/docs/ml/ml-in-practice_files/figure-html/error-versus-number-of-trees-1.png b/docs/ml/ml-in-practice_files/figure-html/error-versus-number-of-trees-1.png
diff --git a/docs/ml/ml-in-practice_files/figure-html/importance-image-1.png b/docs/ml/ml-in-practice_files/figure-html/importance-image-1.png
diff --git a/docs/ml/ml-in-practice_files/figure-html/rf-images,-1.png b/docs/ml/ml-in-practice_files/figure-html/rf-images,-1.png
diff --git a/docs/ml/notation-and-terminology.html b/docs/ml/notation-and-terminology.html
diff --git a/docs/ml/resampling-methods.html b/docs/ml/resampling-methods.html
diff --git a/docs/ml/resampling-methods_files/figure-html/accuracy-vs-k-knn-1.png b/docs/ml/resampling-methods_files/figure-html/accuracy-vs-k-knn-1.png
diff --git a/docs/ml/smoothing.html b/docs/ml/smoothing.html
diff --git a/docs/ml/smoothing_files/figure-html/gaussian-kernel-1.png b/docs/ml/smoothing_files/figure-html/gaussian-kernel-1.png
diff --git a/docs/ml/smoothing_files/figure-html/triweight-kernel-1.png b/docs/ml/smoothing_files/figure-html/triweight-kernel-1.png
diff --git a/docs/prob/continuous-probability.html b/docs/prob/continuous-probability.html
diff --git a/docs/prob/continuous-probability_files/figure-html/simulated-heights-1.png b/docs/prob/continuous-probability_files/figure-html/simulated-heights-1.png
diff --git a/docs/prob/continuous-probability_files/figure-html/simulated-tallest-height-1.png b/docs/prob/continuous-probability_files/figure-html/simulated-tallest-height-1.png
diff --git a/docs/prob/discrete-probability.html b/docs/prob/discrete-probability.html
diff --git a/...screte-probability_files/figure-html/birthday-problem-exact-probabilities-1.png b/...screte-probability_files/figure-html/birthday-problem-exact-probabilities-1.png
diff --git a/.../discrete-probability_files/figure-html/birthday-problem-mc-probabilities-1.png b/.../discrete-probability_files/figure-html/birthday-problem-mc-probabilities-1.png
diff --git a/docs/prob/discrete-probability_files/figure-html/venn-diagram-addition-rule-1.png b/docs/prob/discrete-probability_files/figure-html/venn-diagram-addition-rule-1.png
diff --git a/docs/prob/intro-to-prob.html b/docs/prob/intro-to-prob.html
diff --git a/docs/prob/random-variables-sampling-models-clt.html b/docs/prob/random-variables-sampling-models-clt.html
diff --git a/docs/search.json b/docs/search.json
diff --git a/docs/site_libs/bootstrap/bootstrap-icons.css b/docs/site_libs/bootstrap/bootstrap-icons.css
@@ -1,8 +1,14 @@
+/*!
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+ * Copyright 2019-2023 The Bootstrap Authors
+ * Licensed under MIT (https://github.com/twbs/icons/blob/main/LICENSE)
+ */
+
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 .bi-p-circle-fill::before { content: "\f804"; }
 .bi-p-circle::before { content: "\f805"; }
 .bi-p-square-fill::before { content: "\f806"; }
@@ -1823,8 +1788,6 @@ url("./bootstrap-icons.woff?2ab2cbbe07fcebb53bdaa7313bb290f2") format("woff");
 .bi-pass::before { content: "\f809"; }
 .bi-prescription::before { content: "\f80a"; }
 .bi-prescription2::before { content: "\f80b"; }
-.bi-r-circle-1::before { content: "\f80c"; }
-.bi-r-circle-fill-1::before { content: "\f80d"; }
 .bi-r-circle-fill::before { content: "\f80e"; }
 .bi-r-circle::before { content: "\f80f"; }
 .bi-r-square-fill::before { content: "\f810"; }
@@ -2016,3 +1979,100 @@ url("./bootstrap-icons.woff?2ab2cbbe07fcebb53bdaa7313bb290f2") format("woff");
 .bi-sina-weibo::before { content: "\f8ca"; }
 .bi-tencent-qq::before { content: "\f8cb"; }
 .bi-wikipedia::before { content: "\f8cc"; }
+.bi-alphabet-uppercase::before { content: "\f2a5"; }
+.bi-alphabet::before { content: "\f68a"; }
+.bi-amazon::before { content: "\f68d"; }
+.bi-arrows-collapse-vertical::before { content: "\f690"; }
+.bi-arrows-expand-vertical::before { content: "\f695"; }
+.bi-arrows-vertical::before { content: "\f698"; }
+.bi-arrows::before { content: "\f6a2"; }
+.bi-ban-fill::before { content: "\f6a3"; }
+.bi-ban::before { content: "\f6b6"; }
+.bi-bing::before { content: "\f6c2"; }
+.bi-cake::before { content: "\f6e0"; }
+.bi-cake2::before { content: "\f6ed"; }
+.bi-cookie::before { content: "\f6ee"; }
+.bi-copy::before { content: "\f759"; }
+.bi-crosshair::before { content: "\f769"; }
+.bi-crosshair2::before { content: "\f794"; }
+.bi-emoji-astonished-fill::before { content: "\f795"; }
+.bi-emoji-astonished::before { content: "\f79a"; }
+.bi-emoji-grimace-fill::before { content: "\f79b"; }
+.bi-emoji-grimace::before { content: "\f7a0"; }
+.bi-emoji-grin-fill::before { content: "\f7a1"; }
+.bi-emoji-grin::before { content: "\f7a6"; }
+.bi-emoji-surprise-fill::before { content: "\f7a7"; }
+.bi-emoji-surprise::before { content: "\f7ac"; }
+.bi-emoji-tear-fill::before { content: "\f7ad"; }
+.bi-emoji-tear::before { content: "\f7b2"; }
+.bi-envelope-arrow-down-fill::before { content: "\f7b3"; }
+.bi-envelope-arrow-down::before { content: "\f7b8"; }
+.bi-envelope-arrow-up-fill::before { content: "\f7b9"; }
+.bi-envelope-arrow-up::before { content: "\f7be"; }
+.bi-feather::before { content: "\f7bf"; }
+.bi-feather2::before { content: "\f7c4"; }
+.bi-floppy-fill::before { content: "\f7c5"; }
+.bi-floppy::before { content: "\f7d8"; }
+.bi-floppy2-fill::before { content: "\f7d9"; }
+.bi-floppy2::before { content: "\f7e4"; }
+.bi-gitlab::before { content: "\f7e5"; }
+.bi-highlighter::before { content: "\f7f8"; }
+.bi-marker-tip::before { content: "\f802"; }
+.bi-nvme-fill::before { content: "\f803"; }
+.bi-nvme::before { content: "\f80c"; }
+.bi-opencollective::before { content: "\f80d"; }
+.bi-pci-card-network::before { content: "\f8cd"; }
+.bi-pci-card-sound::before { content: "\f8ce"; }
+.bi-radar::before { content: "\f8cf"; }
+.bi-send-arrow-down-fill::before { content: "\f8d0"; }
+.bi-send-arrow-down::before { content: "\f8d1"; }
+.bi-send-arrow-up-fill::before { content: "\f8d2"; }
+.bi-send-arrow-up::before { content: "\f8d3"; }
+.bi-sim-slash-fill::before { content: "\f8d4"; }
+.bi-sim-slash::before { content: "\f8d5"; }
+.bi-sourceforge::before { content: "\f8d6"; }
+.bi-substack::before { content: "\f8d7"; }
+.bi-threads-fill::before { content: "\f8d8"; }
+.bi-threads::before { content: "\f8d9"; }
+.bi-transparency::before { content: "\f8da"; }
+.bi-twitter-x::before { content: "\f8db"; }
+.bi-type-h4::before { content: "\f8dc"; }
+.bi-type-h5::before { content: "\f8dd"; }
+.bi-type-h6::before { content: "\f8de"; }
+.bi-backpack-fill::before { content: "\f8df"; }
+.bi-backpack::before { content: "\f8e0"; }
+.bi-backpack2-fill::before { content: "\f8e1"; }
+.bi-backpack2::before { content: "\f8e2"; }
+.bi-backpack3-fill::before { content: "\f8e3"; }
+.bi-backpack3::before { content: "\f8e4"; }
+.bi-backpack4-fill::before { content: "\f8e5"; }
+.bi-backpack4::before { content: "\f8e6"; }
+.bi-brilliance::before { content: "\f8e7"; }
+.bi-cake-fill::before { content: "\f8e8"; }
+.bi-cake2-fill::before { content: "\f8e9"; }
+.bi-duffle-fill::before { content: "\f8ea"; }
+.bi-duffle::before { content: "\f8eb"; }
+.bi-exposure::before { content: "\f8ec"; }
+.bi-gender-neuter::before { content: "\f8ed"; }
+.bi-highlights::before { content: "\f8ee"; }
+.bi-luggage-fill::before { content: "\f8ef"; }
+.bi-luggage::before { content: "\f8f0"; }
+.bi-mailbox-flag::before { content: "\f8f1"; }
+.bi-mailbox2-flag::before { content: "\f8f2"; }
+.bi-noise-reduction::before { content: "\f8f3"; }
+.bi-passport-fill::before { content: "\f8f4"; }
+.bi-passport::before { content: "\f8f5"; }
+.bi-person-arms-up::before { content: "\f8f6"; }
+.bi-person-raised-hand::before { content: "\f8f7"; }
+.bi-person-standing-dress::before { content: "\f8f8"; }
+.bi-person-standing::before { content: "\f8f9"; }
+.bi-person-walking::before { content: "\f8fa"; }
+.bi-person-wheelchair::before { content: "\f8fb"; }
+.bi-shadows::before { content: "\f8fc"; }
+.bi-suitcase-fill::before { content: "\f8fd"; }
+.bi-suitcase-lg-fill::before { content: "\f8fe"; }
+.bi-suitcase-lg::before { content: "\f8ff"; }
+.bi-suitcase::before { content: "\f900"; }
+.bi-suitcase2-fill::before { content: "\f901"; }
+.bi-suitcase2::before { content: "\f902"; }
+.bi-vignette::before { content: "\f903"; }
diff --git a/docs/site_libs/bootstrap/bootstrap-icons.woff b/docs/site_libs/bootstrap/bootstrap-icons.woff
diff --git a/docs/site_libs/bootstrap/bootstrap.min.css b/docs/site_libs/bootstrap/bootstrap.min.css
diff --git a/docs/site_libs/bootstrap/bootstrap.min.js b/docs/site_libs/bootstrap/bootstrap.min.js