squash

.Rbuildignore

@@ -21,7 +21,22 @@
 ^doc$
 ^Meta$
 ^CRAN-RELEASE$
-^vignettes$
-^mapSpain\.Rcheck$
-^mapSpain.*\.tar\.gz$
-^mapSpain.*\.tgz$
+^.gitattributes
+^img$
+^_pkgdown\.yml$
+^codemeta\.json$
+^vignettes/articles$
+^vignettes/mapSpain\.Rmd\.orig$
+^_pkgdown\.yaml$
+^CITATION\.cff$
+^tests/testthat/_snaps/esp_getTiles$
+^tests/testthat/_snaps/layer_spatraster$
+^.*\.pdf$
+^CRAN-SUBMISSION$
+^pkgdown\.yaml$
+^pkgdown\.yml$
+^\.imgbotconfig$
+^\.lintr$
+^CODE_OF_CONDUCT\.md$
+^CONTRIBUTING\.md$
+^Rplots\.pdf$

.gitattributes

@@ -1,3 +1,2 @@
-*.css linguist-detectable=false
 *.html linguist-detectable=false
-*.js linguist-detectable=false
+*.js linguist-detectable=false

.github/.gitignore

@@ -1 +1,4 @@
 *.html
+R-version
+depends.Rds
+*.rds

.github/dependabot.yml

@@ -0,0 +1,16 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+# Basic set up for three package managers
+
+version: 2
+updates:
+
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+

.github/workflows/cff-validator.yml

@@ -0,0 +1,21 @@
+on:
+  push:
+    paths:
+      - CITATION.cff
+  workflow_dispatch:
+
+name: CITATION.cff
+jobs:
+  Validate-CITATION-cff:
+    runs-on: ubuntu-latest
+    name: Validate CITATION.cff
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Validate CITATION.cff
+        uses: dieghernan/cff-validator@main
+

.github/workflows/check-full.yaml

@@ -1,15 +1,16 @@
-# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
-# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+# NOTE: This workflow is overkill for most R packages and
+# check-standard.yaml is likely a better choice.
+# usethis::use_github_action("check-standard") will install it.
 on:
   push:
-    branches:
-      - master
+    branches: [main, master]
   pull_request:
-    branches:
-      - master
+    branches: [main, master]
   schedule:
-      - cron:  '0 6 * * 3,6'
-
+    - cron:  '0 14 * * 2,5'
 
 name: R-CMD-check
 
@@ -23,70 +24,36 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: windows-latest, r: 'devel'}
+          #- {os: windows-latest, r: 'devel'}
           - {os: windows-latest, r: 'release'}
           - {os: windows-latest, r: 'oldrel'}
-          # - {os: macOS-latest, r: 'devel'}
+          #- {os: macOS-latest, r: 'devel'}
           - {os: macOS-latest, r: 'release'}
           - {os: macOS-latest, r: 'oldrel'}
-          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
-          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
-          - {os: ubuntu-20.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
-          - {os: ubuntu-20.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          #- {os: ubuntu-latest, r: 'oldrel'}
 
-
 
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-r@master
+      - uses: r-lib/actions/setup-r@v2
         with:
           r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
 
-      - uses: r-lib/actions/setup-pandoc@master
-
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        if: runner.os != 'Windows'
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          cache-version: 5
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        run: |
-          while read -r cmd
-          do
-            eval sudo $cmd
-          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+      - uses: r-lib/actions/check-r-package@v2
 
-      - name: Install dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_cran("rcmdcheck")
-        shell: Rscript {0}
-
-      - name: Check
-        env:
-          _R_CHECK_CRAN_INCOMING_REMOTE_: false
-        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
-        shell: Rscript {0}
-
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
-        with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check

.github/workflows/cran-status.yaml

@@ -0,0 +1,24 @@
+name: CRAN Status Monitor
+
+on:
+  workflow_dispatch:
+  schedule:
+    - cron: '0 10 * * 1,3,5'
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    permissions: write-all
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Check
+        uses: dieghernan/cran-status-check@v1
+        with:
+          fail-on-error: "true"
+          create-issue: "false"
+

.github/workflows/lint.yaml

@@ -0,0 +1,71 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+# lintr provides static code analysis for R.
+# It checks for adherence to a given style,
+# identifying syntax errors and possible semantic issues,
+# then reports them to you so you can take action.
+# More details at https://lintr.r-lib.org/
+
+name: lintr
+
+on:
+  push:
+    branches:
+      - main
+      - master
+  workflow_dispatch:
+  pull_request:
+    # The branches below must be a subset of the branches above
+    branches:
+      - main
+      - master
+  schedule:
+    - cron: '56 11 * * 5'
+
+permissions:
+  contents: read
+
+jobs:
+  lintr:
+    name: Run lintr scanning
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read # for checkout to fetch code
+      security-events: write # for github/codeql-action/upload-sarif to upload SARIF results
+      actions: read # only required for a private repository by github/codeql-action/upload-sarif to get the Action run status
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - name: Setup lintr
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            local::.
+            any::lintr
+
+      - name: Run lintr
+        run: |
+          # Lintr package
+          out <- lintr::lint_package()
+          # Create SARIF report
+          lintr::sarif_output(out, "lintr-results.sarif")
+          # Display
+          out
+        shell: Rscript {0}
+        continue-on-error: true
+
+      - name: Upload analysis results to GitHub
+        uses: github/codeql-action/upload-sarif@v3
+        with:
+          sarif_file: lintr-results.sarif
+          wait-for-processing: true
+

.github/workflows/pkgcheck.yaml

@@ -0,0 +1,21 @@
+name: pkgcheck
+
+# This will cancel running jobs once a new run is triggered
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref }}
+  cancel-in-progress: true
+
+on:
+  # Manually trigger the Action under Actions/pkgcheck
+  workflow_dispatch:
+
+jobs:
+  pkgcheck:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: ropensci-review-tools/pkgcheck-action@main
+        with:
+          summary-only: false
+          post-to-issue: true
+          append-to-issue: true
+

.github/workflows/recheck.yaml

@@ -0,0 +1,20 @@
+# Workflow derived from https://github.com/r-devel/recheck
+on:
+    workflow_dispatch:
+      inputs:
+        which:
+          type: choice
+          description: Which dependents to check
+          options:
+          - strong
+          - most
+
+name: r-devel reverse dependency check
+
+jobs:
+    revdep_check:
+      name: Reverse check ${{ inputs.which }} dependents
+      uses: r-devel/recheck/.github/workflows/recheck.yml@v1
+      with:
+        which: ${{ inputs.which }}
+