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Use promises for URLs in IGV to have fresh signing each time they used #3979

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merged 2 commits into from
May 24, 2024

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@fiskus fiskus commented May 17, 2024

  • Changelog entry (skip if change is not significant to end users, e.g. docs only)

@fiskus fiskus changed the title Use promises for URLs in IGV to have fresh signing each time Use promises for URLs in IGV to have fresh signing each time they used May 17, 2024
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codecov bot commented May 17, 2024

Codecov Report

Attention: Patch coverage is 50.00000% with 6 lines in your changes are missing coverage. Please review.

Project coverage is 36.68%. Comparing base (9ea699f) to head (4d22715).

Files Patch % Lines
catalog/app/components/Preview/loaders/Igv.ts 0.00% 3 Missing ⚠️
...pp/components/Preview/loaders/useSignObjectUrls.ts 66.66% 3 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master    #3979      +/-   ##
==========================================
+ Coverage   36.56%   36.68%   +0.11%     
==========================================
  Files         724      724              
  Lines       32248    32254       +6     
  Branches     4605     4773     +168     
==========================================
+ Hits        11793    11833      +40     
+ Misses      19792    19259     -533     
- Partials      663     1162     +499     
Flag Coverage Δ
api-python 90.95% <ø> (ø)
catalog 10.70% <50.00%> (+0.18%) ⬆️
lambda 87.96% <ø> (ø)

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@fiskus fiskus force-pushed the fix-igv-signing-short-lifetome branch from fad10e9 to 68ecd1b Compare May 17, 2024 17:17
@fiskus fiskus requested a review from nl0 May 17, 2024 17:25
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nl0 previously approved these changes May 21, 2024
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i don't quite get it -- is IGV able to accept async thunks instead of strings as URLs?

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fiskus commented May 21, 2024

is IGV able to accept async thunks instead of strings as URLs?

Yes, it is. Sorry, I didn't add this to the PR description.
They use their own helper module for every URL (though in documentation they said only about tracks URLs), and it nailed down to that function where it is a check if URL is a string or a function, and those functions or strings could be async:
https://github.com/igvteam/igv-utils/blob/master/src/igvxhr.js#L91

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fiskus commented May 23, 2024

I can pass thunks but if indexURL or indexFile is omitted, they try to guess it, and it produces invalid URL like function(){}.fai. I filed a bug and fix igvteam/igv.js#1821
Hope they accept it, so I can remove our hacky fix: https://github.com/quiltdata/quilt/pull/3979/files#diff-6add50e55b85715ee3b4fb41a53452478a83ba438d1f94230d83bb7e6ba6d0acR81

@fiskus fiskus requested a review from nl0 May 23, 2024 17:14
@fiskus fiskus enabled auto-merge May 23, 2024 17:15
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nl0 commented May 24, 2024

Hope they accept it

looks like they did. not sure when they're going to cut their next release tho

@fiskus fiskus added this pull request to the merge queue May 24, 2024
Merged via the queue into master with commit 0563259 May 24, 2024
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@fiskus fiskus deleted the fix-igv-signing-short-lifetome branch May 24, 2024 06:23
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2 participants