database: postgres implementation with tests.

quay · Jul 26, 2017 · 4c0b6ac · 4c0b6ac
1 parent 0065dab
commit 4c0b6ac
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Showing 30 changed files with 2,986 additions and 2,979 deletions.
diff --git a/database/pgsql/ancestry.go b/database/pgsql/ancestry.go
@@ -0,0 +1,271 @@
+package pgsql
+
+import (
+	"database/sql"
+	"errors"
+	"fmt"
+
+	"strings"
+
+	"github.com/coreos/clair/database"
+	"github.com/coreos/clair/pkg/commonerr"
+	"github.com/lib/pq"
+	log "github.com/sirupsen/logrus"
+)
+
+func (tx *pgSession) UpsertAncestry(ancestry database.Ancestry, features []database.NamespacedFeature, processedBy database.Processors) error {
+	if ancestry.Name == "" {
+		log.Warning("Empty ancestry name is not allowed")
+		return commonerr.NewBadRequestError("could not insert an ancestry with empty name")
+	}
+
+	if len(ancestry.Layers) == 0 {
+		log.Warning("Empty ancestry is not allowed")
+		return commonerr.NewBadRequestError("could not insert an ancestry with 0 layers")
+	}
+
+	err := tx.deleteAncestry(ancestry.Name)
+	if err != nil {
+		return err
+	}
+
+	var ancestryID int
+	err = tx.QueryRow(insertAncestry, ancestry.Name).Scan(&ancestryID)
+	if err != nil {
+		return handleError("insertAncestry", err)
+	}
+
+	err = tx.insertAncestryLayers(ancestryID, ancestry.Layers)
+	if err != nil {
+		return err
+	}
+
+	err = tx.insertAncestryFeatures(ancestryID, features)
+	if err != nil {
+		return err
+	}
+
+	return tx.persistProcessors(persistAncestryLister,
+		"persistAncestryLister",
+		persistAncestryDetector,
+		"persistAncestryDetector",
+		ancestryID, processedBy)
+}
+
+func (tx *pgSession) FindAncestry(name string) (database.Ancestry, database.Processors, bool, error) {
+	ancestry := database.Ancestry{Name: name}
+	processed := database.Processors{}
+
+	var ancestryID int
+	err := tx.QueryRow(searchAncestry, name).Scan(&ancestryID)
+	if err != nil {
+		if err == sql.ErrNoRows {
+			return ancestry, processed, false, nil
+		}
+		return ancestry, processed, false, handleError("searchAncestry", err)
+	}
+
+	ancestry.Layers, err = tx.findAncestryLayers(ancestryID)
+	if err != nil {
+		return ancestry, processed, false, err
+	}
+
+	processed.Detectors, err = tx.findProcessors(searchAncestryDetectors, "searchAncestryDetectors", "detector", ancestryID)
+	if err != nil {
+		return ancestry, processed, false, err
+	}
+
+	processed.Listers, err = tx.findProcessors(searchAncestryListers, "searchAncestryListers", "lister", ancestryID)
+	if err != nil {
+		return ancestry, processed, false, err
+	}
+
+	return ancestry, processed, true, nil
+}
+
+func (tx *pgSession) FindAncestryFeatures(name string) (database.AncestryWithFeatures, bool, error) {
+	var (
+		awf database.AncestryWithFeatures
+		ok  bool
+		err error
+	)
+	awf.Ancestry, awf.ProcessedBy, ok, err = tx.FindAncestry(name)
+	if err != nil {
+		return awf, false, err
+	}
+
+	if !ok {
+		return awf, false, nil
+	}
+
+	rows, err := tx.Query(searchAncestryFeatures, name)
+	if err != nil {
+		return awf, false, handleError("searchAncestryFeatures", err)
+	}
+
+	for rows.Next() {
+		nf := database.NamespacedFeature{}
+		err := rows.Scan(&nf.Namespace.Name, &nf.Namespace.VersionFormat, &nf.Feature.Name, &nf.Feature.Version)
+		if err != nil {
+			return awf, false, handleError("searchAncestryFeatures", err)
+		}
+		nf.Feature.VersionFormat = nf.Namespace.VersionFormat
+		awf.Features = append(awf.Features, nf)
+	}
+
+	return awf, true, nil
+}
+
+func (tx *pgSession) deleteAncestry(name string) error {
+	result, err := tx.Exec(removeAncestry, name)
+	if err != nil {
+		return handleError("removeAncestry", err)
+	}
+
+	_, err = result.RowsAffected()
+	if err != nil {
+		return handleError("removeAncestry", err)
+	}
+
+	return nil
+}
+
+func (tx *pgSession) findProcessors(query, queryName, processorType string, id int) ([]string, error) {
+	rows, err := tx.Query(query, id)
+	if err != nil {
+		if err == sql.ErrNoRows {
+			log.Warning("No " + processorType + " are used")
+			return nil, nil
+		}
+		return nil, handleError(queryName, err)
+	}
+
+	var (
+		processors []string
+		processor  string
+	)
+
+	for rows.Next() {
+		err := rows.Scan(&processor)
+		if err != nil {
+			return nil, handleError(queryName, err)
+		}
+		processors = append(processors, processor)
+	}
+
+	return processors, nil
+}
+
+func (tx *pgSession) findAncestryLayers(ancestryID int) ([]database.Layer, error) {
+	rows, err := tx.Query(searchAncestryLayer, ancestryID)
+	if err != nil {
+		return nil, handleError("searchAncestryLayer", err)
+	}
+	layers := []database.Layer{}
+	for rows.Next() {
+		var layer database.Layer
+		err := rows.Scan(&layer.Hash)
+		if err != nil {
+			return nil, handleError("searchAncestryLayer", err)
+		}
+		layers = append(layers, layer)
+	}
+	return layers, nil
+}
+
+func (tx *pgSession) insertAncestryLayers(ancestryID int, layers []database.Layer) error {
+	layerIDs := map[string]sql.NullInt64{}
+	for _, l := range layers {
+		layerIDs[l.Hash] = sql.NullInt64{}
+	}
+
+	layerHashes := []string{}
+	for hash := range layerIDs {
+		layerHashes = append(layerHashes, hash)
+	}
+
+	rows, err := tx.Query(searchLayerIDs, pq.Array(layerHashes))
+	if err != nil {
+		return handleError("searchLayerIDs", err)
+	}
+
+	for rows.Next() {
+		var (
+			layerID   sql.NullInt64
+			layerName string
+		)
+		err := rows.Scan(&layerID, &layerName)
+		if err != nil {
+			return handleError("searchLayerIDs", err)
+		}
+		layerIDs[layerName] = layerID
+	}
+
+	notFound := []string{}
+	for hash, id := range layerIDs {
+		if !id.Valid {
+			notFound = append(notFound, hash)
+		}
+	}
+
+	if len(notFound) > 0 {
+		return handleError("searchLayerIDs", fmt.Errorf("Layer %s is not found in database", strings.Join(notFound, ",")))
+	}
+
+	stmt, err := tx.Prepare(copyinAncestryLayer)
+	if err != nil {
+		return handleError("copyinAncestryLayer", err)
+	}
+
+	for index, layer := range layers {
+		_, err := stmt.Exec(ancestryID, index, layerIDs[layer.Hash].Int64)
+		if err != nil {
+			return handleError("copyinAncestryLayer", commonerr.CombineErrors(err, stmt.Close()))
+		}
+	}
+
+	if _, err := stmt.Exec(); err != nil {
+		return handleError("copyinAncestryLayer", commonerr.CombineErrors(err, stmt.Close()))
+	}
+
+	if err := stmt.Close(); err != nil {
+		return handleError("copyinAncestryLayer", err)
+	}
+	return nil
+}
+
+func (tx *pgSession) insertAncestryFeatures(ancestryID int, features []database.NamespacedFeature) error {
+	featureIDs, err := tx.findNamespacedFeatureIDs(features)
+	if err != nil {
+		return err
+	}
+
+	// bulk insert ancestry features
+	stmtFeatures, err := tx.Prepare(copyinAncestryFeatures)
+	if err != nil {
+		return handleError("copyinAncestryFeatures", err)
+	}
+
+	for _, id := range featureIDs {
+		if !id.Valid {
+			stmtFeatures.Close()
+			return errors.New("requested namespaced feature is not in database")
+		}
+
+		_, err := stmtFeatures.Exec(ancestryID, id)
+		if err != nil {
+			stmtFeatures.Close()
+			return handleError("copyinAncestryFeatures", err)
+		}
+	}
+
+	if _, err := stmtFeatures.Exec(); err != nil {
+		stmtFeatures.Close()
+		return handleError("copyinAncestryFeatures", err)
+	}
+
+	if err := stmtFeatures.Close(); err != nil {
+		return handleError("copyinAncestryFeatures", err)
+	}
+	return nil
+}