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Removing human sequences from short read samples using bowtie2

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nf-dehost

Usage

nextflow run thanhleviet/nf-dehost \
--sample_sheet /path/to/sample_sheet.csv \
--ref /path/to/bowtie2/ref/basename \
--outdir /path/to/output/location

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Removing human sequences from short read samples using bowtie2

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  • Python 61.2%
  • Nextflow 38.8%