Code

Refactor global state#486

Code

Merged

liamhuber merged 117 commits intomasterpyiron/pyiron_base:masterfrom refactor_idepyiron/pyiron_base:refactor_ideCopy head branch name to clipboardNov 12, 2021

+1,434-1,128

Commits

Commits on Oct 20, 2021

• Make promises about Settings

  liamhuber

  committed
  d57d519

  Copy full SHA for d57d519

• Fix typo

  liamhuber

  committed
  2781496

  Copy full SHA for 2781496

Commits on Oct 21, 2021

• Test the promises

  liamhuber

  committed
  6cce1db

  Copy full SHA for 6cce1db

• Slide the code for non-core responsibilities down to the bottom

  liamhuber

  committed
  76e491b

  Copy full SHA for 76e491b

• Touch up docstrings

  liamhuber

  committed
  8384c2a

  Copy full SHA for 8384c2a

• Hide conversion method

  liamhuber

  committed
  6399ebb

  Copy full SHA for 6399ebb

Commits on Oct 22, 2021

• Try to debug issue on windows

  Show description for a206c9d
  liamhuber

  committed
  a206c9d

  Copy full SHA for a206c9d

• Resolve pycharm nits

  liamhuber

  committed
  045c72a

  Copy full SHA for 045c72a

• Remove debug print

  Show description for 00ccf05
  liamhuber

  committed
  00ccf05

  Copy full SHA for 00ccf05

• Add debug print for new windows problem

  liamhuber

  committed
  a12423b

  Copy full SHA for a12423b

• Pyiron internally converts to something like posix so try using that for comparison

  liamhuber

  committed
  63c50e6

  Copy full SHA for 63c50e6

• Remove debug prints

  Show description for 2259c70
  liamhuber

  committed
  2259c70

  Copy full SHA for 2259c70

• Remove unused imports

  liamhuber

  committed
  10a29c0

  Copy full SHA for 10a29c0

• Merge branch 'master' into settings_promises

  liamhuber

  committed
  a4b6407

  Copy full SHA for a4b6407

• Test both cases for top_dir

  liamhuber

  committed
  647f10b

  Copy full SHA for 647f10b

• Remove extra jazz on top of singleton and delete old tests

  Show description for 2f4aba6
  liamhuber

  committed
  2f4aba6

  Copy full SHA for 2f4aba6

• In fact, just remove the argument altogether

  Show description for 7bf1b68
  liamhuber

  committed
  7bf1b68

  Copy full SHA for 7bf1b68

• Make backup restoration more robust

  Show description for b39f099
  liamhuber

  committed
  b39f099

  Copy full SHA for b39f099

• Merge branch 'settings_promises' into refactor_ide

  liamhuber

  committed
  b90be96

  Copy full SHA for b90be96

• Update docstring

  liamhuber

  committed
  fa73255

  Copy full SHA for fa73255

• Crown one true king

  Show description for 25bbf70
  liamhuber

  committed
  25bbf70

  Copy full SHA for 25bbf70

• Refactor rename: settings now live under IDE

  liamhuber

  committed
  2578166

  Copy full SHA for 2578166

• Use IDE as one key point of access

  Show description for 0752f4d
  liamhuber

  committed
  0752f4d

  Copy full SHA for 0752f4d

Commits on Oct 23, 2021

• Resolve deprecation warning

  liamhuber

  committed
  e66ace5

  Copy full SHA for e66ace5

• Force the script job to ignore project checks

  Show description for cea0fda
  liamhuber

  committed
  cea0fda

  Copy full SHA for cea0fda

• Remove unused imports

  liamhuber

  committed
  fa46622

  Copy full SHA for fa46622

• Be more explicit with names

  liamhuber

  committed
  b52bdf4

  Copy full SHA for b52bdf4

• Allow access directly from the class

  Show description for 6df5d76
  liamhuber

  committed
  6df5d76

  Copy full SHA for 6df5d76

• Also convert paths coming from system environment variables

  liamhuber

  committed
  8cfead8

  Copy full SHA for 8cfead8

• Oops, don't convert non-path items

  liamhuber

  committed
  b1c3956

  Copy full SHA for b1c3956

• Use fstring

  Show description for a997b1c
  liamhuber

  committed
  a997b1c

  Copy full SHA for a997b1c

• Be more explicit in error message

  liamhuber

  committed
  80916e7

  Copy full SHA for 80916e7

• Access via IDE

  liamhuber

  committed
  a2f022c

  Copy full SHA for a2f022c

• Derp, avoid circular import

  Show description for e174ebd
  liamhuber

  committed
  e174ebd

  Copy full SHA for e174ebd

• Refactor path splitting and only convert once at the end

  liamhuber

  committed
  ac6630e

  Copy full SHA for ac6630e

• Desperate windows debug print

  Show description for 866f835
  liamhuber

  committed
  866f835

  Copy full SHA for 866f835

• Keep revising path parsing

  Show description for a6a32ab
  liamhuber

  committed
  a6a32ab

  Copy full SHA for a6a32ab

• Hail Mary

  Show description for b1bf0de
  liamhuber

  committed
  b1bf0de

  Copy full SHA for b1bf0de

Commits on Oct 24, 2021

• Make one liner

  liamhuber

  committed
  23551db

  Copy full SHA for 23551db

• Directly convert paths passed into top_path

  Show description for 8b5fbd9
  liamhuber

  committed
  8b5fbd9

  Copy full SHA for 8b5fbd9

• Remove unnecessary conversion

  Show description for 75b7bae
  liamhuber

  committed
  75b7bae

  Copy full SHA for 75b7bae

• Use IDE

  liamhuber

  committed
  30231d9

  Copy full SHA for 30231d9

• Wrap where we manually assign to project_paths

  Show description for 998ec3b
  liamhuber

  committed
  998ec3b

  Copy full SHA for 998ec3b

• Print the object ID to check if we're getting multiple instances somehow

  liamhuber

  committed
  2ce392c

  Copy full SHA for 2ce392c

• It worked but...

  Show description for a91332a
  liamhuber

  committed
  a91332a

  Copy full SHA for a91332a

• Use new singleton instances throughout base

  liamhuber

  committed
  7ef14dd

  Copy full SHA for 7ef14dd

• Decouple logger and add tests

  liamhuber

  committed
  9b4b63f

  Copy full SHA for 9b4b63f

• Accommodate running more tests

  Show description for a9309fc
  liamhuber

  committed
  a9309fc

  Copy full SHA for a9309fc

• Retain any existing log file

  liamhuber

  committed
  125c98e

  Copy full SHA for 125c98e

• Use the new logger in the ide

  liamhuber

  committed
  021b67f

  Copy full SHA for 021b67f

• Update copyright year

  liamhuber

  committed
  d1dfdbc

  Copy full SHA for d1dfdbc

• Refactor the queue adapter out

  liamhuber

  committed
  33a6dcc

  Copy full SHA for 33a6dcc

• Improve docstring and trailing newline

  liamhuber

  committed
  f2ff4ea

  Copy full SHA for f2ff4ea

• Accommodate method binding and deprecate

  liamhuber

  committed
  ac04e34

  Copy full SHA for ac04e34

• Add test

  liamhuber

  committed
  8651c34

  Copy full SHA for 8651c34

• Be more specific in docstring

  liamhuber

  committed
  e9168b9

  Copy full SHA for e9168b9

• Remove unused import

  liamhuber

  committed
  ed4076f

  Copy full SHA for ed4076f

• Extract publications

  liamhuber

  committed
  d8315b4

  Copy full SHA for d8315b4

• Deprecate calls on settings that are now handled by the IDE

  liamhuber

  committed
  46e3ce6

  Copy full SHA for 46e3ce6

• Revert deprecation warnings

  Show description for fa05ac3
  liamhuber

  committed
  fa05ac3

  Copy full SHA for fa05ac3

• Move the IDE object upstream

  liamhuber

  committed
  43a00dd

  Copy full SHA for 43a00dd

• Obfuscate object names

  Show description for 1459a45
  liamhuber

  committed
  1459a45

  Copy full SHA for 1459a45

• Move singleton back where it came from

  Show description for c3943ed
  liamhuber

  committed
  c3943ed

  Copy full SHA for c3943ed

• Add a note to convey intent

  Show description for 867a646
  liamhuber

  committed
  867a646

  Copy full SHA for 867a646

Commits on Oct 26, 2021

• Merge branch 'master' into refactor_ide

  liamhuber

  committed
  f5b9f96

  Copy full SHA for f5b9f96

• Merge branch 'master' into refactor_ide

  Show description for 48320a9
  liamhuber

  committed
  48320a9

  Copy full SHA for 48320a9

• Clean up empty files

  liamhuber

  committed
  ea14eab

  Copy full SHA for ea14eab

• Rename IDE to state

  liamhuber

  committed
  075c0cd

  Copy full SHA for 075c0cd

• Make state object more boring and order attributes by import hierarchy

  liamhuber

  committed
  0813c60

  Copy full SHA for 0813c60

• Add docs to state

  liamhuber

  committed
  270dfa2

  Copy full SHA for 270dfa2

• Rationalize settings update and reintroduce user arg

  liamhuber

  committed
  c45c972

  Copy full SHA for c45c972

• Refactor slide and rename

  liamhuber

  committed
  46644d0

  Copy full SHA for 46644d0

• Refactor rename test submodule

  liamhuber

  committed
  254c982

  Copy full SHA for 254c982

• Shorten conversion

  liamhuber

  committed
  950d61a

  Copy full SHA for 950d61a

• Be explicit

  Show description for 07bbbdb
  liamhuber

  committed
  07bbbdb

  Copy full SHA for 07bbbdb

• Be explicit, don't sneak a database somewhere

  Show description for 2988b10
  liamhuber

  committed
  2988b10

  Copy full SHA for 2988b10

• Rely on the conversion done in the update

  liamhuber

  committed
  4a1bb8e

  Copy full SHA for 4a1bb8e

• Oneline stuff that fits

  liamhuber

  committed
  fc58740

  Copy full SHA for fc58740

Commits on Oct 27, 2021

• Wipe and reset all config elements

  liamhuber

  committed
  1784157

  Copy full SHA for 1784157

• rename test

  liamhuber

  committed
  3a9a3b3

  Copy full SHA for 3a9a3b3

• Clean standard config for each test

  liamhuber

  committed
  2d9ddaf

  Copy full SHA for 2d9ddaf

Commits on Oct 29, 2021

• Test validation

  liamhuber

  committed
  387f132

  Copy full SHA for 387f132

• Test other validation

  liamhuber

  committed
  ce02d38

  Copy full SHA for ce02d38

• Test env reading

  liamhuber

  committed
  b767d24

  Copy full SHA for b767d24

• Test file reading

  liamhuber

  committed
  96c32ac

  Copy full SHA for 96c32ac

• Test comment in file

  liamhuber

  committed
  80f87a2

  Copy full SHA for 80f87a2

• Test path list conversion

  liamhuber

  committed
  bd54c64

  Copy full SHA for bd54c64

• Construct adapters from scratch

  liamhuber

  committed
  feca361

  Copy full SHA for feca361

• Add update to database manager

  liamhuber

  committed
  0b421bd

  Copy full SHA for 0b421bd

• Add update alias for queue adapter

  liamhuber

  committed
  dbc0ca0

  Copy full SHA for dbc0ca0

• Add global update to state module

  liamhuber

  committed
  a7c0698

  Copy full SHA for a7c0698

• Be more precise with wording

  liamhuber

  committed
  9708b14

  Copy full SHA for 9708b14

Commits on Nov 2, 2021

• Refactor getting conda resources

  liamhuber

  committed
  cdeffac

  Copy full SHA for cdeffac

• Relocate weird snippet

  Show description for e82b47a
  liamhuber

  committed
  e82b47a

  Copy full SHA for e82b47a

• Centralize and test SQLite config input

  liamhuber

  committed
  3b409f9

  Copy full SHA for 3b409f9

• Move all the sql connecting string parsing over to database

  Show description for 0f54f6d
  liamhuber

  committed
  0f54f6d

  Copy full SHA for 0f54f6d

• Fix typo

  Show description for 9af4e06
  liamhuber

  committed
  9af4e06

  Copy full SHA for 9af4e06

• Decouple input validation and input transformation

  Show description for e50b29f
  liamhuber

  committed
  e50b29f

  Copy full SHA for e50b29f

• Exploit state for database manager calls

  liamhuber

  committed
  97aef1a

  Copy full SHA for 97aef1a

Commits on Nov 3, 2021

• Update deprecation message

  

  niklassiemer

  authored and

  liamhuber

  committed
  0cee352

  Copy full SHA for 0cee352

• Settings docstrings

  liamhuber

  committed
  f8d1fa3

  Copy full SHA for f8d1fa3

• Don't use protected variable name

  liamhuber

  committed
  f2a52bf

  Copy full SHA for f2a52bf

• Finish settings type hints

  liamhuber

  committed
  d91b70e

  Copy full SHA for d91b70e

• Polish state docs and hinting

  liamhuber

  committed
  25ee04f

  Copy full SHA for 25ee04f

• Polish publications docs and hinting

  liamhuber

  committed
  121c802

  Copy full SHA for 121c802

• Polish queue adapters docs and hinting

  liamhuber

  committed
  5e5801d

  Copy full SHA for 5e5801d

• Merge branch 'master' into refactor_ide

  liamhuber

  committed
  f183ff2

  Copy full SHA for f183ff2

Commits on Nov 4, 2021

• Use converted values from database manager

  Show description for 2fe44ac
  liamhuber

  committed
  2fe44ac

  Copy full SHA for 2fe44ac

• Use consistent nomenclature

  

  max-hassani

  authored and

  liamhuber

  committed
  ddeba69

  Copy full SHA for ddeba69

Commits on Nov 5, 2021

• Update the adapters not the single instance

  liamhuber

  committed
  242046e

  Copy full SHA for 242046e

Commits on Nov 8, 2021

• Actually use the validation guys!

  liamhuber

  committed
  1673a21

  Copy full SHA for 1673a21

Commits on Nov 10, 2021

• Merge branch 'master' into refactor_ide

  Show description for 054fe49
  liamhuber

  committed
  054fe49

  Copy full SHA for 054fe49

• Get the logger importing first

  Show description for 9e7eded
  liamhuber

  committed
  9e7eded

  Copy full SHA for 9e7eded

• Remove unimported guys

  Show description for 7d18f54
  liamhuber

  committed
  7d18f54

  Copy full SHA for 7d18f54

• Fix old doc

  liamhuber

  committed
  a8a918c

  Copy full SHA for a8a918c

Commits on Nov 12, 2021

• Merge remote-tracking branch 'origin/master' into refactor_ide

  liamhuber

  committed
  eae2485

  Copy full SHA for eae2485

• Update pyiron_base/project/generic.py

  Show description for ad66b2a
  

  liamhuber

  and

  niklassiemer

  authored
  ad66b2a

  Copy full SHA for ad66b2a