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HDF interface: fix read_dict_from_hdf() #1267

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merged 1 commit into from
Dec 26, 2023
Merged

HDF interface: fix read_dict_from_hdf() #1267

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22 changes: 13 additions & 9 deletions pyiron_base/storage/helper_functions.py
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Original file line number Diff line number Diff line change
Expand Up @@ -242,16 +242,20 @@ def resolve_nested_dict(group_path, data_dict):
with open_hdf5(file_name, mode="r") as store:
output_dict = get_dict_from_nodes(store=store, h5_path=h5_path, slash=slash)
for group_path in group_paths:
output_dict.update(
resolve_nested_dict(
group_path=group_path,
data_dict=get_dict_from_nodes(
store=store,
h5_path=get_h5_path(h5_path=h5_path, name=group_path),
slash=slash,
),
)
read_dict = resolve_nested_dict(
group_path=group_path,
data_dict=get_dict_from_nodes(
store=store,
h5_path=get_h5_path(h5_path=h5_path, name=group_path),
slash=slash,
),
)
for k, v in read_dict.items():
if k in output_dict.keys() and isinstance(v, dict):
for sk, vs in v.items():
output_dict[k][sk] = vs
else:
output_dict[k] = v
return output_dict


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