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Remove to_hdf() and from_hdf() from LAMMPS input class #1538

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======================================================================
ERROR: test_lammps_water (lammps.test_base.TestLammps)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/lammps/test_base.py", line 190, in test_lammps_water
    self.job.run()
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_snippets/deprecate.py", line 158, in decorated
    return function(*args, **kwargs)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 888, in run
    self._run_if_collect()
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 1459, in _run_if_collect
    run_job_with_status_collect(job=self)
  File "/usr/share/miniconda3/envs/my-env/lib/python3.10/site-packages/pyiron_base/jobs/job/runfunction.py", line 339, in run_job_with_status_collect
    job.save_output(output_dict=parsed_output)
  File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/base.py", line 425, in save_output
    self.input.from_hdf(self._hdf5)
AttributeError: 'Input' object has no attribute 'from_hdf'

@jan-janssen jan-janssen marked this pull request as draft August 24, 2024 13:45
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