Do not call deprecated remove_jobs_silently

tests/atomistics/job/test_sqs.py

@@ -13,7 +13,7 @@ class TestSQS(unittest.TestCase):
     def setUpClass(cls):
         cls.file_location = os.path.dirname(os.path.abspath(__file__))
         cls.project = Project(os.path.join(cls.file_location, "test_sqs"))
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
 
     @classmethod
     def tearDownClass(cls):

tests/atomistics/master/test_elastic.py

@@ -24,7 +24,7 @@ def setUpClass(cls):
         cls.basis = CrystalStructure(
             element="Fe", bravais_basis="bcc", lattice_constant=2.83
         )
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
 
     @classmethod
     def tearDownClass(cls):

tests/atomistics/master/test_murnaghan_master_modal.py

@@ -37,15 +37,13 @@ def setUpClass(cls):
         cls.basis = CrystalStructure(
             element="Fe", bravais_basis="bcc", lattice_constant=2.8
         )
-        cls.project.remove_jobs_silently(recursive=True)
-        # cls.project.remove_jobs(recursive=True)
-        # self.project.set_logging_level('INFO')
+        cls.project.remove_jobs(recursive=True, silently=True)
 
     @classmethod
     def tearDownClass(cls):
         file_location = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(file_location, "testing_murnaghan_master_modal"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True, enforce=True)
 
     def test_run(self):

tests/atomistics/master/test_murnaghan_non_modal.py

@@ -53,15 +53,15 @@ def setUpClass(cls):
         cls.basis = CrystalStructure(
             element="Fe", bravais_basis="bcc", lattice_constant=2.8
         )
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         # cls.project.remove_jobs(recursive=True)
         # self.project.set_logging_level('INFO')
 
     @classmethod
     def tearDownClass(cls):
         file_location = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(file_location, "testing_murnaghan_non_modal"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True, enforce=True)
 
     def test_run(self):

tests/interactive/test_activation_relaxation_technique.py

@@ -17,7 +17,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.file_location = os.path.dirname(os.path.abspath(__file__))
         cls.project = Project(os.path.join(cls.file_location, 'art'))
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         cls.project.remove(enable=True)
 
     def test_R(self):

tests/interactive/test_quasi_newton.py

@@ -15,7 +15,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.file_location = os.path.dirname(os.path.abspath(__file__))
         cls.project = Project(os.path.join(cls.file_location, 'qn'))
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         cls.project.remove(enable=True)
 
     def test_run_qn_regularization(self):

tests/interactive/test_scipyminimizer.py

@@ -16,7 +16,7 @@ def setUpClass(cls):
 
     @classmethod
     def tearDownClass(cls):
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         cls.project.remove(enable=True, enforce=True)
 
     def test_run(self):

tests/interactive/test_sxextoptint.py

@@ -28,7 +28,7 @@ def test_input(self):
     def tearDownClass(cls):
         cls.file_location = os.path.dirname(os.path.abspath(__file__))
         cls.project = Project(os.path.join(cls.file_location, "../static/sxextopt"))
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
 
 
 if __name__ == "__main__":

tests/lammps/test_base.py

@@ -52,7 +52,7 @@ def setUp(self) -> None:
 
     def tearDown(self) -> None:
         super().tearDown()
-        self.ref_project.remove_jobs_silently(recursive=True)  # cf. comment in setUp
+        self.ref_project.remove_jobs(recursive=True, silently=True)  # cf. comment in setUp
 
     def test_selective_dynamics(self):
         atoms = Atoms("Fe8", positions=np.zeros((8, 3)), cell=np.eye(3))

tests/lammps/test_interactive.py

@@ -59,7 +59,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.execution_path = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(cls.execution_path, "lammps"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True)
 
     def test_interactive_cells_setter(self):

tests/lammps/test_structure.py

@@ -46,7 +46,7 @@ def setUp(self) -> None:
 
     def tearDown(self) -> None:
         super().tearDown()
-        self.ref_project.remove_jobs_silently(recursive=True)  # cf. comment in setUp
+        self.ref_project.remove_jobs(recursive=True, silently=True)  # cf. comment in setUp
 
     def test_velocity_basics(self):
         creator = Creator(self.project)

tests/table/test_datamining.py

@@ -20,7 +20,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.execution_path = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(cls.execution_path, "table"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True)
 
     def test_get_majority(self):

tests/test_project.py

@@ -21,7 +21,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.execution_path = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(cls.execution_path, "test_project"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True)
 
     def test_structure_creation(self):

tests/testing/test_exampleJob_non_modal.py

@@ -16,15 +16,15 @@ def setUpClass(cls):
         cls.project = Project(
             os.path.join(cls.file_location, "random_testing_non_modal")
         )
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         cls.project.set_logging_level("INFO")
 
     @classmethod
     def tearDownClass(cls):
         # print('tear down')
         file_location = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(file_location, "random_testing_non_modal"))
-        project.remove_jobs_silently()
+        project.remove_jobs(silently=True)
         project.remove(enable=True)
 
     def test_non_modal_run(self):

tests/testing/test_serialMaster.py

@@ -29,7 +29,7 @@ class TestSerialMaster(unittest.TestCase):
     def setUpClass(cls):
         cls.file_location = os.path.dirname(os.path.abspath(__file__))
         cls.project = Project(os.path.join(cls.file_location, "testing_serial"))
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
 
     @classmethod
     def tearDownClass(cls):

tests/testing/test_serialMaster_non_modal.py

@@ -31,7 +31,7 @@ def setUpClass(cls):
         cls.project = Project(
             os.path.join(cls.file_location, "testing_serial_non_modal")
         )
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
 
     @classmethod
     def tearDownClass(cls):

tests/thermodynamics/test_hessianJob.py

@@ -16,7 +16,7 @@ def setUpClass(cls):
         cls.project = Project(
             os.path.join(cls.file_location, "hessian_class")
         )
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         cls.job = cls.project.create_job(
             "HessianJob", "job_test_hessian"
         )

tests/thermodynamics/test_interface.py

@@ -22,7 +22,7 @@ def setUpClass(cls):
         cls.project = Project(
             os.path.join(cls.file_location, "interface")
         )
-        cls.project.remove_jobs_silently(recursive=True)
+        cls.project.remove_jobs(recursive=True, silently=True)
         cls.structure = Atoms(
             positions=[[0, 0, 0], [1, 1, 1]], elements=["Fe", "Fe"], cell=2 * np.eye(3)
         )

tests/vasp/test_vasp.py

@@ -53,7 +53,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.execution_path = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(cls.execution_path, "test_vasp"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True)
         state.update()
 

tests/vasp/test_vasp_import.py

@@ -22,7 +22,7 @@ def setUpClass(cls):
     def tearDownClass(cls):
         cls.file_location = os.path.dirname(os.path.abspath(__file__))
         project = Project(os.path.join(cls.file_location, "vasp_import_testing"))
-        project.remove_jobs_silently(recursive=True)
+        project.remove_jobs(recursive=True, silently=True)
         project.remove(enable=True)
 
     def test_import(self):