Bump scipy from 1.13.1 to 1.14.0

[dependabot]

Bumps scipy from 1.13.1 to 1.14.0.

Release notes

Sourced from scipy's releases.

SciPy 1.14.0 Release Notes

SciPy 1.14.0 is the culmination of 3 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been a number of deprecations and API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with python -Wd and check for DeprecationWarning s). Our development attention will now shift to bug-fix releases on the 1.14.x branch, and on adding new features on the main branch.

This release requires Python 3.10+ and NumPy 1.23.5 or greater.

For running on PyPy, PyPy3 6.0+ is required.

Highlights of this release

• SciPy now supports the new Accelerate library introduced in macOS 13.3, and has wheels built against Accelerate for macOS >=14 resulting in significant performance improvements for many linear algebra operations.
• A new method, cobyqa, has been added to scipy.optimize.minimize - this is an interface for COBYQA (Constrained Optimization BY Quadratic Approximations), a derivative-free optimization solver, designed to supersede COBYLA, developed by the Department of Applied Mathematics, The Hong Kong Polytechnic University.
• scipy.sparse.linalg.spsolve_triangular is now more than an order of magnitude faster in many cases.

New features

scipy.fft improvements

• A new function, scipy.fft.prev_fast_len, has been added. This function finds the largest composite of FFT radices that is less than the target length. It is useful for discarding a minimal number of samples before FFT.

scipy.io improvements

• wavfile now supports reading and writing of wav files in the RF64 format, allowing files greater than 4 GB in size to be handled.

scipy.constants improvements

• Experimental support for the array API standard has been added.

... (truncated)

Commits

• 87c4664 REL: SciPy 1.14.0 rel commit [wheel build]
• ac63c81 Merge pull request #21019 from tylerjereddy/treddy_1.14.0_final_backports
• 541003f DOC: update 1.14 relnotes [wheel build]
• a08d1ff MAINT: stats.gstd: warn when an observation is <= 0
• a4f7119 DEP: special.perm: deprecate non-integer N and k with exact=True (#20909)
• 73339fb TST: stats: fix use of np.testing to compare xp-arrays
• 0542df6 DOC: Update 1.14.0 release notes
• f8e530c STY: _lib._util: silence mypy
• e2cbda2 TST:sparse.linalg: Skip test due to sensitivity to numerical noise
• 4fb2e6a TST: robustify test_nnls_inner_loop_case1
• Additional commits viewable in compare view

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[jan-janssen]

Waiting for pyiron/structuretoolkit#202

  The following packages are incompatible
  ├─ python 3.11**  is requested and can be installed;
  ├─ scipy 1.14.0**  is installable with the potential options
  │  ├─ scipy [1.11.3|1.11.4|...|1.14.0] would require
  │  │  └─ python_abi 3.12.* *_cp312, which requires
  │  │     └─ python 3.12.* *_cpython, which conflicts with any installable versions previously reported;
  │  └─ scipy 1.14.0, which can be installed;
  └─ structuretoolkit 0.0.25**  is not installable because it requires
     └─ scipy >=1.9.3,<=1.13.1  but there are no viable options
        ├─ scipy [1.10.0|1.10.1|...|1.9.3] conflicts with any installable versions previously reported;
        └─ scipy [1.11.3|1.11.4|...|1.14.0], which cannot be installed (as previously explained).

[jan-janssen]

ImportError: cannot import name 'calc_molecular_dynamics_phonons_with_lammps' from 'atomistics.calculators' (/usr/share/miniconda3/envs/my-env/lib/python3.12/site-packages/atomistics/calculators/__init__.py)