Code

Compatibility for zarr-python 3.x#9552

Code

Merged

dcherian merged 93 commits intopydata:mainpydata/xarray:mainfrom TomAugspurger:fix/zarr-v3TomAugspurger/xarray:fix/zarr-v3Copy head branch name to clipboardOct 23, 2024

+674-245

Commits

Commits on Sep 30, 2024

• Remove zarr pin

  TomAugspurger

  committed
  c54a052

• Define zarr_v3 helper

  TomAugspurger

  committed
  483eb7f

• zarr-v3: filters / compressors -> codecs

  TomAugspurger

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  40a746c

• zarr-v3: update tests to avoid values equal to fillValue

  TomAugspurger

  committed
  6c8d2bb

• Various test fixes

  TomAugspurger

  committed
  531b521

• zarr_version fixes

  Show description for 849df40
  TomAugspurger

  committed
  849df40

• fixup! zarr-v3: filters / compressors -> codecs

  TomAugspurger

  committed
  88bd64b

• fixup! fixup! zarr-v3: filters / compressors -> codecs

  TomAugspurger

  committed
  ef1549a

• fixup

  TomAugspurger

  committed
  20c22bd

• path / key normalization in set_variables

  TomAugspurger

  committed
  6087e5e

Commits on Oct 1, 2024

• fixes

  TomAugspurger

  committed
  15fe55e

• workaround nested consolidated metadata

  TomAugspurger

  committed
  8e06bc7

• Merge remote-tracking branch 'upstream/main' into fix/zarr-v3

  TomAugspurger

  committed
  f22100e

• test: avoid fill_value

  TomAugspurger

  committed
  f8c427f

Commits on Oct 2, 2024

• test: Adjust call counts

  TomAugspurger

  committed
  594d36d

• zarr-python 3.x Array.resize doesn't mutate

  TomAugspurger

  committed
  046d37e

• test compatibility

  Show description for 6b0ca62
  TomAugspurger

  committed
  6b0ca62

• skip ZipStore with_mode

  TomAugspurger

  committed
  d315583

• test: more fill_value avoidance

  TomAugspurger

  committed
  389cc82

• test: more fill_value avoidance

  TomAugspurger

  committed
  1fe409a

• v3 compat for instrumented test

  TomAugspurger

  committed
  7c29ea6

Commits on Oct 7, 2024

• Merge remote-tracking branch 'upstream/main' into fix/zarr-v3

  TomAugspurger

  committed
  efb66dd

Commits on Oct 8, 2024

• Merge remote-tracking branch 'upstream/main' into fix/zarr-v3

  TomAugspurger

  committed
  90c0ae6

• Handle zarr_version / zarr_format deprecation

  TomAugspurger

  committed
  9b3c288

Commits on Oct 9, 2024

• wip

  rabernat

  committed
  3717391

• most Zarr tests passing

  rabernat

  committed
  8d16bb2

• unskip tests

  rabernat

  committed
  bd978b0

• add custom Zarr _FillValue encoding / decoding

  rabernat

  committed
  34c4c24

• Merge branch 'fix/zarr-v3' into ryan/fix/zarr-3

  TomAugspurger

  authored
  118e50e

• Merge pull request #1 from rabernat/ryan/fix/zarr-3

  Show description for e6e2066
  TomAugspurger

  authored
  e6e2066

• relax dtype comparison in test_roundtrip_empty_vlen_string_array

  rabernat

  committed
  1d1d9cb

• Merge remote-tracking branch 'tom/fix/zarr-v3' into ryan/fix/zarr-3

  rabernat

  committed
  9089508

• fix test_explicitly_omit_fill_value_via_encoding_kwarg

  rabernat

  committed
  ea00308

• fix test_append_string_length_mismatch_raises

  rabernat

  committed
  a330e4b

Commits on Oct 10, 2024

• fix test_check_encoding_is_consistent_after_append for v3

  rabernat

  committed
  bde42ee

• skip roundtrip_endian for zarr v3

  rabernat

  committed
  b15705d

• unskip datetimes and fix test_compressor_encoding

  rabernat

  committed
  38f43b9

• unskip tests

  rabernat

  committed
  1cfc458

• add back dtype skip

  rabernat

  committed
  af1a0b8

• Merge branches 'ryan/fix/zarr-v3-2', 'ryan/fix/zarr-v3-3', 'ryan/fix/zarr-v3-4', 'ryan/fix/zarr-v3-5', 'ryan/fix/zarr-v3-6', 'ryan/fix/zarr-v3-7' and 'ryan/fix/zarr-v3-8' into ryan/fix/zarr-v3-comb…

  Show description for d9d6fee
  rabernat

  committed
  d9d6fee

• Merge pull request #2 from rabernat/ryan/fix/zarr-v3-2

  Show description for 4c54371
  TomAugspurger

  authored
  4c54371

• Merge pull request #9 from rabernat/ryan/fix/zarr-v3-combined

  Show description for 1ce8878
  TomAugspurger

  authored
  1ce8878

• point upstream to v3 branch

  TomAugspurger

  committed
  0c2e260

Commits on Oct 11, 2024

• Merge branch 'main' into fix/zarr-v3

  jhamman

  authored
  fc2738a

• Create temporary directory before using it

  TomAugspurger

  committed
  0e47c3f

• Avoid zarr.storage.zip on v2

  TomAugspurger

  committed
  5b39f42

• fixed close_store_on_close bug

  TomAugspurger

  committed
  7d9fc05

• Remove workaround, fixed upstream

  TomAugspurger

  committed
  0fa94ee

• Restore original w mode.

  TomAugspurger

  committed
  c2fd6f1

• workaround for store closing with mode=w

  TomAugspurger

  committed
  ac2ef29

• typing fixes

  TomAugspurger

  committed
  c6be467

• compat

  TomAugspurger

  committed
  5b5b77f

• Remove unnecessary pop

  TomAugspurger

  committed
  4f07eb7

• fixed skip

  TomAugspurger

  committed
  5151bc2

• fixup types

  TomAugspurger

  committed
  00c62d7

• fixup types

  TomAugspurger

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  e0390a5

Commits on Oct 12, 2024

• [test-upstream]

  TomAugspurger

  committed
  2e7ec07

• Update install-upstream-wheels.sh

  jhamman

  authored
  26081d4

Commits on Oct 13, 2024

• set use_consolidated to false when user provides consolidated=False

  jhamman

  committed
  0350056

Commits on Oct 14, 2024

• fix: import consolidated_metadata from package root

  jhamman

  committed
  a38bff6

• fix: relax instrumented store checks for v3

  jhamman

  committed
  08f0594

• Merge pull request #10 from jhamman/fix/zarr-v3-consolidated-false

  Show description for 0e81edf
  TomAugspurger

  authored
  0e81edf

• Merge pull request #11 from jhamman/fix/cm-import

  Show description for 55d852d
  TomAugspurger

  authored
  55d852d

• Merge pull request #12 from jhamman/fix/instrumented-store-check

  Show description for 3491137
  TomAugspurger

  authored
  3491137

• Merge remote-tracking branch 'upstream/main' into fix/zarr-v3

  TomAugspurger

  committed
  5bf5f2a

• Adjust 2.18.3 thresholds

  TomAugspurger

  committed
  f2f9fff

• skip datatree zarr tests w/ zarr 3 for now

  jhamman

  committed
  a84fa79

• Merge pull request #13 from jhamman/fix/skip-datatree-tests

  Show description for c280f24
  TomAugspurger

  authored
  c280f24

• fixed kvstore usage

  TomAugspurger

  committed
  9fec1d6

• typing fixes

  TomAugspurger

  committed
  04c017e

• move zarr.codecs import

  TomAugspurger

  committed
  625591e

• fixup ignores

  TomAugspurger

  committed
  3795b07

• storage options fix, skip

  TomAugspurger

  committed
  ea2cb57

• fixed types

  TomAugspurger

  committed
  4f617d2

• Update ci/install-upstream-wheels.sh

  jhamman

  authored
  d1e3c73

• type fixes

  jhamman

  committed
  45d5a78

• whats-new

  jhamman

  committed
  f208c39

• Update xarray/tests/test_backends_datatree.py

  jhamman

  authored
  968217c

• fix type import

  jhamman

  committed
  45a37f6

• Merge branch 'fix/zarr-v3' of github.com:TomAugspurger/xarray into fix/zarr-v3

  jhamman

  committed
  c15e856

Commits on Oct 15, 2024

• set mapper, chunk_mapper

  TomAugspurger

  committed
  c10bfc0

• Pass through zarr_format

  TomAugspurger

  committed
  82e6a6d

• Fixup

  TomAugspurger

  committed
  d752693

• Merge remote-tracking branch 'upstream/main' into fix/zarr-v3

  TomAugspurger

  committed
  0fd4103

• more cleanup

  TomAugspurger

  committed
  c2a47a1

• revert test changes

  TomAugspurger

  committed
  26b2661

Commits on Oct 21, 2024

• Update xarray/backends/zarr.py

  dcherian

  authored
  1d73d36

• cleanup

  dcherian

  committed
  be79e88

• update docstring

  dcherian

  committed
  ff0f2c0

• Merge branch 'main' into fix/zarr-v3

  Show description for 5f37042
  dcherian

  committed
  5f37042

Commits on Oct 22, 2024

• fix rtd

  dcherian

  committed
  268e3eb

• Merge branch 'main' into fix/zarr-v3

  Show description for 1abb2ba
  dcherian

  committed
  1abb2ba

• tweak

  dcherian

  committed
  7682bf4