(feat): Support for pandas
ExtensionArray
#12220
Workflow file for this run
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name: CI | |
on: | |
push: | |
branches: | |
- "main" | |
pull_request: | |
branches: | |
- "main" | |
workflow_dispatch: # allows you to trigger manually | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
detect-ci-trigger: | |
name: detect ci trigger | |
runs-on: ubuntu-latest | |
if: | | |
github.repository == 'pydata/xarray' | |
&& (github.event_name == 'push' || github.event_name == 'pull_request') | |
outputs: | |
triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 2 | |
- uses: xarray-contrib/ci-trigger@v1 | |
id: detect-trigger | |
with: | |
keyword: "[skip-ci]" | |
test: | |
name: ${{ matrix.os }} py${{ matrix.python-version }} ${{ matrix.env }} | |
runs-on: ${{ matrix.os }} | |
needs: detect-ci-trigger | |
if: needs.detect-ci-trigger.outputs.triggered == 'false' | |
env: | |
ZARR_V3_EXPERIMENTAL_API: 1 | |
defaults: | |
run: | |
shell: bash -l {0} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
# Bookend python versions | |
python-version: ["3.9", "3.11", "3.12"] | |
env: [""] | |
include: | |
# Minimum python version: | |
- env: "bare-minimum" | |
python-version: "3.9" | |
os: ubuntu-latest | |
- env: "min-all-deps" | |
python-version: "3.9" | |
os: ubuntu-latest | |
# Latest python version: | |
- env: "all-but-dask" | |
python-version: "3.10" | |
os: ubuntu-latest | |
- env: "flaky" | |
python-version: "3.10" | |
os: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 # Fetch all history for all branches and tags. | |
- name: Set environment variables | |
run: | | |
echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
if [[ ${{ matrix.os }} == windows* ]] ; | |
then | |
if [[ ${{ matrix.python-version }} != "3.12" ]]; then | |
echo "CONDA_ENV_FILE=ci/requirements/environment-windows.yml" >> $GITHUB_ENV | |
else | |
echo "CONDA_ENV_FILE=ci/requirements/environment-windows-3.12.yml" >> $GITHUB_ENV | |
fi | |
elif [[ "${{ matrix.env }}" != "" ]] ; | |
then | |
if [[ "${{ matrix.env }}" == "flaky" ]] ; | |
then | |
echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV | |
echo "PYTEST_EXTRA_FLAGS=--run-flaky --run-network-tests" >> $GITHUB_ENV | |
else | |
echo "CONDA_ENV_FILE=ci/requirements/${{ matrix.env }}.yml" >> $GITHUB_ENV | |
fi | |
else | |
if [[ ${{ matrix.python-version }} != "3.12" ]]; then | |
echo "CONDA_ENV_FILE=ci/requirements/environment.yml" >> $GITHUB_ENV | |
else | |
echo "CONDA_ENV_FILE=ci/requirements/environment-3.12.yml" >> $GITHUB_ENV | |
fi | |
fi | |
echo "PYTHON_VERSION=${{ matrix.python-version }}" >> $GITHUB_ENV | |
- name: Setup micromamba | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: ${{ env.CONDA_ENV_FILE }} | |
environment-name: xarray-tests | |
cache-environment: true | |
cache-environment-key: "${{runner.os}}-${{runner.arch}}-py${{matrix.python-version}}-${{env.TODAY}}-${{hashFiles(env.CONDA_ENV_FILE)}}" | |
create-args: >- | |
python=${{matrix.python-version}} | |
conda | |
# We only want to install this on one run, because otherwise we'll have | |
# duplicate annotations. | |
- name: Install error reporter | |
if: ${{ matrix.os }} == 'ubuntu-latest' and ${{ matrix.python-version }} == '3.10' | |
run: | | |
python -m pip install pytest-github-actions-annotate-failures | |
- name: Install xarray | |
run: | | |
python -m pip install --no-deps -e . | |
- name: Version info | |
run: | | |
conda info -a | |
conda list | |
python xarray/util/print_versions.py | |
- name: Import xarray | |
run: | | |
python -c "import xarray" | |
- name: Restore cached hypothesis directory | |
uses: actions/cache@v4 | |
with: | |
path: .hypothesis/ | |
key: cache-hypothesis | |
enableCrossOsArchive: true | |
save-always: true | |
- name: Run tests | |
run: python -m pytest -n 4 | |
--timeout 180 | |
--cov=xarray | |
--cov-report=xml | |
--junitxml=pytest.xml | |
$PYTEST_EXTRA_FLAGS | |
- name: Upload test results | |
if: always() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: Test results for ${{ runner.os }}-${{ matrix.python-version }} ${{ matrix.env }} | |
path: pytest.xml | |
- name: Upload code coverage to Codecov | |
uses: codecov/[email protected] | |
with: | |
file: ./coverage.xml | |
flags: unittests | |
env_vars: RUNNER_OS,PYTHON_VERSION | |
name: codecov-umbrella | |
fail_ci_if_error: false | |
event_file: | |
name: "Event File" | |
runs-on: ubuntu-latest | |
if: github.repository == 'pydata/xarray' | |
steps: | |
- name: Upload | |
uses: actions/upload-artifact@v4 | |
with: | |
name: Event File | |
path: ${{ github.event_path }} |