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Fixes mode argument with --mode=genanswers
When `sudo atomic run projectatomic/helloapache --mode=genanswers` is supplied, the resulting error shows that `--mode=genanswers` is an unrecognized argument. This was introduced after refactoring the cli/main.py code to NOT include uneeded parameters such as --provider-auth to CLI options such as init and genanswers. By adding `self.parser.parse_known_args`, this will ignore the added --mode=genaswers to the CLI. Fixes #792
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