buggy files form Math #45

projects/Math/45/org/apache/commons/math/linear/OpenMapRealMatrix.java

@@ -0,0 +1,273 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ *      http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package org.apache.commons.math.linear;
+
+import java.io.Serializable;
+
+import org.apache.commons.math.exception.NumberIsTooLargeException;
+import org.apache.commons.math.util.OpenIntToDoubleHashMap;
+
+/**
+ * Sparse matrix implementation based on an open addressed map.
+ *
+ * @version $Id$
+ * @since 2.0
+ */
+public class OpenMapRealMatrix extends AbstractRealMatrix
+    implements SparseRealMatrix, Serializable {
+    /** Serializable version identifier. */
+    private static final long serialVersionUID = -5962461716457143437L;
+    /** Number of rows of the matrix. */
+    private final int rows;
+    /** Number of columns of the matrix. */
+    private final int columns;
+    /** Storage for (sparse) matrix elements. */
+    private final OpenIntToDoubleHashMap entries;
+
+    /**
+     * Build a sparse matrix with the supplied row and column dimensions.
+     *
+     * @param rowDimension Number of rows of the matrix.
+     * @param columnDimension Number of columns of the matrix.
+     */
+    public OpenMapRealMatrix(int rowDimension, int columnDimension) {
+        super(rowDimension, columnDimension);
+        this.rows = rowDimension;
+        this.columns = columnDimension;
+        this.entries = new OpenIntToDoubleHashMap(0.0);
+    }
+
+    /**
+     * Build a matrix by copying another one.
+     *
+     * @param matrix matrix to copy.
+     */
+    public OpenMapRealMatrix(OpenMapRealMatrix matrix) {
+        this.rows = matrix.rows;
+        this.columns = matrix.columns;
+        this.entries = new OpenIntToDoubleHashMap(matrix.entries);
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public OpenMapRealMatrix copy() {
+        return new OpenMapRealMatrix(this);
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public OpenMapRealMatrix createMatrix(int rowDimension, int columnDimension) {
+        return new OpenMapRealMatrix(rowDimension, columnDimension);
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public int getColumnDimension() {
+        return columns;
+    }
+
+    /**
+     * Compute the sum of this matrix and {@code m}.
+     *
+     * @param m Matrix to be added.
+     * @return {@code this} + {@code m}.
+     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * if {@code m} is not the same size as this matrix.
+     */
+    public OpenMapRealMatrix add(OpenMapRealMatrix m) {
+
+        // safety check
+        MatrixUtils.checkAdditionCompatible(this, m);
+
+        final OpenMapRealMatrix out = new OpenMapRealMatrix(this);
+        for (OpenIntToDoubleHashMap.Iterator iterator = m.entries.iterator(); iterator.hasNext();) {
+            iterator.advance();
+            final int row = iterator.key() / columns;
+            final int col = iterator.key() - row * columns;
+            out.setEntry(row, col, getEntry(row, col) + iterator.value());
+        }
+
+        return out;
+
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public OpenMapRealMatrix subtract(final RealMatrix m) {
+        try {
+            return subtract((OpenMapRealMatrix) m);
+        } catch (ClassCastException cce) {
+            return (OpenMapRealMatrix) super.subtract(m);
+        }
+    }
+
+    /**
+     * Subtract {@code m} from this matrix.
+     *
+     * @param m Matrix to be subtracted.
+     * @return {@code this} - {@code m}.
+     * @throws org.apache.commons.math.exception.DimensionMismatchException
+     * if {@code m} is not the same size as this matrix.
+     */
+    public OpenMapRealMatrix subtract(OpenMapRealMatrix m) {
+        // Safety check.
+        MatrixUtils.checkAdditionCompatible(this, m);
+
+        final OpenMapRealMatrix out = new OpenMapRealMatrix(this);
+        for (OpenIntToDoubleHashMap.Iterator iterator = m.entries.iterator(); iterator.hasNext();) {
+            iterator.advance();
+            final int row = iterator.key() / columns;
+            final int col = iterator.key() - row * columns;
+            out.setEntry(row, col, getEntry(row, col) - iterator.value());
+        }
+
+        return out;
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public RealMatrix multiply(final RealMatrix m) {
+        try {
+            return multiply((OpenMapRealMatrix) m);
+        } catch (ClassCastException cce) {
+
+            // safety check
+            MatrixUtils.checkMultiplicationCompatible(this, m);
+
+            final int outCols = m.getColumnDimension();
+            final BlockRealMatrix out = new BlockRealMatrix(rows, outCols);
+            for (OpenIntToDoubleHashMap.Iterator iterator = entries.iterator(); iterator.hasNext();) {
+                iterator.advance();
+                final double value = iterator.value();
+                final int key      = iterator.key();
+                final int i        = key / columns;
+                final int k        = key % columns;
+                for (int j = 0; j < outCols; ++j) {
+                    out.addToEntry(i, j, value * m.getEntry(k, j));
+                }
+            }
+
+            return out;
+        }
+    }
+
+    /**
+     * Postmultiply this matrix by {@code m}.
+     *
+     * @param m Matrix to postmultiply by.
+     * @return {@code this} * {@code m}.
+     * @throws MatrixDimensionMismatchException
+     * if the number of rows of {@code m} differ from the number of columns
+     * of this matrix.
+     */
+    public OpenMapRealMatrix multiply(OpenMapRealMatrix m) {
+        // Safety check.
+        MatrixUtils.checkMultiplicationCompatible(this, m);
+
+        final int outCols = m.getColumnDimension();
+        OpenMapRealMatrix out = new OpenMapRealMatrix(rows, outCols);
+        for (OpenIntToDoubleHashMap.Iterator iterator = entries.iterator(); iterator.hasNext();) {
+            iterator.advance();
+            final double value = iterator.value();
+            final int key      = iterator.key();
+            final int i        = key / columns;
+            final int k        = key % columns;
+            for (int j = 0; j < outCols; ++j) {
+                final int rightKey = m.computeKey(k, j);
+                if (m.entries.containsKey(rightKey)) {
+                    final int outKey = out.computeKey(i, j);
+                    final double outValue =
+                        out.entries.get(outKey) + value * m.entries.get(rightKey);
+                    if (outValue == 0.0) {
+                        out.entries.remove(outKey);
+                    } else {
+                        out.entries.put(outKey, outValue);
+                    }
+                }
+            }
+        }
+
+        return out;
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public double getEntry(int row, int column) {
+        MatrixUtils.checkRowIndex(this, row);
+        MatrixUtils.checkColumnIndex(this, column);
+        return entries.get(computeKey(row, column));
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public int getRowDimension() {
+        return rows;
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public void setEntry(int row, int column, double value) {
+        MatrixUtils.checkRowIndex(this, row);
+        MatrixUtils.checkColumnIndex(this, column);
+        if (value == 0.0) {
+            entries.remove(computeKey(row, column));
+        } else {
+            entries.put(computeKey(row, column), value);
+        }
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public void addToEntry(int row, int column, double increment) {
+        MatrixUtils.checkRowIndex(this, row);
+        MatrixUtils.checkColumnIndex(this, column);
+        final int key = computeKey(row, column);
+        final double value = entries.get(key) + increment;
+        if (value == 0.0) {
+            entries.remove(key);
+        } else {
+            entries.put(key, value);
+        }
+    }
+
+    /** {@inheritDoc} */
+    @Override
+    public void multiplyEntry(int row, int column, double factor) {
+        MatrixUtils.checkRowIndex(this, row);
+        MatrixUtils.checkColumnIndex(this, column);
+        final int key = computeKey(row, column);
+        final double value = entries.get(key) * factor;
+        if (value == 0.0) {
+            entries.remove(key);
+        } else {
+            entries.put(key, value);
+        }
+    }
+
+    /**
+     * Compute the key to access a matrix element
+     * @param row row index of the matrix element
+     * @param column column index of the matrix element
+     * @return key within the map to access the matrix element
+     */
+    private int computeKey(int row, int column) {
+        return row * columns + column;
+    }
+
+
+}