Code

update to v.0.9.7#11

Code

Merged

luponzo86 merged 24 commits intoprody:masterprody/rhapsody:masterfrom luponzo86:masterluponzo86/rhapsody:masterCopy head branch name to clipboardDec 13, 2019

+6,703-167

Commits

Commits on Aug 29, 2019

• docs for rhapsody.__init__

  luponzo86

  committed
  bfe8909

  Copy full SHA for bfe8909

Commits on Aug 30, 2019

• upload sequence to PolyPhen2 if discrepancy is found in selected isoform. Test-2 added as well

  luponzo86

  committed
  efebaca

  Copy full SHA for efebaca

• test-2 added

  luponzo86

  committed
  bb27010

  Copy full SHA for bb27010

• -

  luponzo86

  committed
  7fa0f89

  Copy full SHA for 7fa0f89

• -

  luponzo86

  committed
  7175d82

  Copy full SHA for 7175d82

Commits on Aug 31, 2019

• -

  luponzo86

  committed
  1189350

  Copy full SHA for 1189350

• -

  luponzo86

  committed
  f1e95da

  Copy full SHA for f1e95da

Commits on Oct 12, 2019

• add protein-stratified CV

  luponzo86

  committed
  03f66a1

  Copy full SHA for 03f66a1

Commits on Oct 13, 2019

• resetTimestamp

  luponzo86

  committed
  06e480b

  Copy full SHA for 06e480b

Commits on Oct 19, 2019

• add calcClassMetrics and error bars to metrics

  luponzo86

  committed
  5e2074b

  Copy full SHA for 5e2074b

Commits on Oct 21, 2019

• -

  luponzo86

  committed
  2cc2dfc

  Copy full SHA for 2cc2dfc

Commits on Nov 3, 2019

• add importDefaultClassifier()

  luponzo86

  committed
  a8a34af

  Copy full SHA for a8a34af

Commits on Nov 14, 2019

• add tqdm progress bars to main loops

  luponzo86

  committed
  050ea7b

  Copy full SHA for 050ea7b

• -

  luponzo86

  committed
  c43117b

  Copy full SHA for c43117b

Commits on Dec 8, 2019

• add '.importFeatMatrix()' and 'ignore_PolyPhen2_errors' option to core

  luponzo86

  committed
  a584f74

  Copy full SHA for a584f74

Commits on Dec 10, 2019

• add authorship to predict submodules

  luponzo86

  committed
  a6d9d3c

  Copy full SHA for a6d9d3c

• add authorship to all modules

  luponzo86

  committed
  d9e6318

  Copy full SHA for d9e6318

• VERSION file moved inside rhapsody module

  luponzo86

  committed
  5b69dee

  Copy full SHA for 5b69dee

• bug fix in PolyPhen2 output: path. class = 'none' is sometimes used instead of '?'

  luponzo86

  committed
  ca48d4a

  Copy full SHA for ca48d4a

• bug fix in _isSaturationMutagenesis()

  luponzo86

  committed
  9ca2727

  Copy full SHA for 9ca2727

• -

  luponzo86

  committed
  b894663

  Copy full SHA for b894663

Commits on Dec 13, 2019

• version 0.9.5

  luponzo86

  committed
  23a8705

  Copy full SHA for 23a8705

• bug fix, version 0.9.6

  luponzo86

  committed
  557d4e4

  Copy full SHA for 557d4e4

• -

  luponzo86

  committed
  95cb130

  Copy full SHA for 95cb130