Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bump the python-packages group with 2 updates #216

Closed
wants to merge 1 commit into from

Conversation

dependabot[bot]
Copy link

@dependabot dependabot bot commented on behalf of github Apr 15, 2024

Bumps the python-packages group with 2 updates: scikit-image and numpy.

Updates scikit-image from 0.19.3 to 0.23.1

Release notes

Sourced from scikit-image's releases.

v0.23.1

scikit-image 0.23.1

We're happy to announce the release of scikit-image 0.23.1!

[!NOTE] Due to an issue with the CI system scikit-image 0.23.0 was never released. This release is identical to what 0.23.0 would have been other than the CI fix and the version number.

Highlights

  • Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695).
  • Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Speedup skimage.util.map_array by parallelization with Cython's prange (#7266).

New Features

  • Add new intensity_std property to skimage.measure.regionprops which computes the standard deviation of the intensity in a region (#6712).
  • Add parameter mode to binary_erosion, binary_dilation, binary_opening and binary_closing in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add functions mirror_footprint and pad_footprint to skimage.morphology (#6695).
  • Add parameters mode and cval to erosion, dilation, opening, closing, white_tophat, and black_tophat in skimage.morphology. These new parameters determine how array borders are handled (#6695).
  • Add new parameter spacing to segmentation.expand_labels to support anisotropic images (#7080).

API Changes

  • Drop support for Python 3.9 (#7217).
  • Parameters shift_x and shift_y in skimage.morphology.erosion and skimage.morphology.dilation are deprecated. Use pad_footprint or modify the footprint manually instead (#6695).
  • Remove unexpected value scaling in skimage.morphology.skeletonize_3d for non-binary input images. skeletonize_3d now always returns a binary array like similar functions (#7095).
  • Deprecate function skimage.feature.plot_matches in favor of skimage.feature.plot_matched_features (#7255).
  • Deprecate skimage.morphology.skeletonize_3d in favor of just skimage.morphology.skeletonize (#7094).
  • Deprecate parameter output in skimage.filters.gaussian; use out instead (#7225).
  • Change the default value of the parameters shift_x, shift_y and shift_z from False to 0 in the skimage.filters.rank functions. This has not impact on the results. Warn in case boolean shifts are provided from now on (#7320).

Performance

  • Add lazy loading to skimage.metrics module (#7211).
  • Speedup skimage.util.map_array by parallelization with Cython's prange (#7266).

Bug Fixes

  • Add exception to avoid surprising result when image is too small for the given parameters in skimage.feature.hog (#7153).
  • Ensure skimage.morphology.closing and skimage.morphology.opening are extensive and anti-extensive, respectively, if the footprint is not mirror symmetric (#6695).
  • Avoid a TypeError in skimage.registration.phase_cross_correlation when the real-time shift cannot be determined (disambiguate=True). Display a warning instead (#7259).
  • Fix logic in skimage.graph.pixel_graph which raised a TypeError when the parameter edge_function was provided without a mask (#7310).
  • Ensure cache stays empty when cache=False is passed to skimage.measure.regionprops (#7333).

Documentation

  • Update instructions for updating dev environment (#7160).

... (truncated)

Commits

Updates numpy from 1.26.2 to 1.26.4

Release notes

Sourced from numpy's releases.

v1.26.4

NumPy 1.26.4 Release Notes

NumPy 1.26.4 is a maintenance release that fixes bugs and regressions discovered after the 1.26.3 release. The Python versions supported by this release are 3.9-3.12. This is the last planned release in the 1.26.x series.

Contributors

A total of 13 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Elliott Sales de Andrade
  • Lucas Colley +
  • Mark Ryan +
  • Matti Picus
  • Nathan Goldbaum
  • Ola x Nilsson +
  • Pieter Eendebak
  • Ralf Gommers
  • Sayed Adel
  • Sebastian Berg
  • Stefan van der Walt
  • Stefano Rivera

Pull requests merged

A total of 19 pull requests were merged for this release.

  • #25323: BUG: Restore missing asstr import
  • #25523: MAINT: prepare 1.26.x for further development
  • #25539: BUG: numpy.array_api: fix linalg.cholesky upper decomp...
  • #25584: CI: Bump azure pipeline timeout to 120 minutes
  • #25585: MAINT, BLD: Fix unused inline functions warnings on clang
  • #25599: BLD: include fix for MinGW platform detection
  • #25618: TST: Fix test_numeric on riscv64
  • #25619: BLD: fix building for windows ARM64
  • #25620: MAINT: add newaxis to __all__ in numpy.array_api
  • #25630: BUG: Use large file fallocate on 32 bit linux platforms
  • #25643: TST: Fix test_warning_calls on Python 3.12
  • #25645: TST: Bump pytz to 2023.3.post1
  • #25658: BUG: Fix AVX512 build flags on Intel Classic Compiler
  • #25670: BLD: fix potential issue with escape sequences in __config__.py
  • #25718: CI: pin cygwin python to 3.9.16-1 and fix typing tests [skip...
  • #25720: MAINT: Bump cibuildwheel to v2.16.4
  • #25748: BLD: unvendor meson-python on 1.26.x and upgrade to meson-python...
  • #25755: MAINT: Include header defining backtrace
  • #25756: BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)

... (truncated)

Commits
  • 9815c16 Merge pull request #25770 from charris/prepare-1.26.4
  • 114ed25 REL: Prepare for the NumPy 1.26.4 release
  • 2fae4d3 Merge pull request #25323 from stefanor/import-asstr
  • ce89a0a Merge pull request #25756 from charris/backport-24711
  • f62dfc6 Merge pull request #25755 from charris/backport-25709
  • fee88ab BUG: Fix np.quantile([Fraction(2,1)], 0.5) (#24711)
  • 659be68 MAINT: Include header defining backtrace
  • 837cd38 Merge pull request #25748 from rgommers/unvendor-mesonpython
  • f984240 CI: upgrade cibuildwheel from 2.16.4 to 2.16.5 [wheel build]
  • 3548f9d BLD: unvendor meson-python [wheel build]
  • Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore <dependency name> major version will close this group update PR and stop Dependabot creating any more for the specific dependency's major version (unless you unignore this specific dependency's major version or upgrade to it yourself)
  • @dependabot ignore <dependency name> minor version will close this group update PR and stop Dependabot creating any more for the specific dependency's minor version (unless you unignore this specific dependency's minor version or upgrade to it yourself)
  • @dependabot ignore <dependency name> will close this group update PR and stop Dependabot creating any more for the specific dependency (unless you unignore this specific dependency or upgrade to it yourself)
  • @dependabot unignore <dependency name> will remove all of the ignore conditions of the specified dependency
  • @dependabot unignore <dependency name> <ignore condition> will remove the ignore condition of the specified dependency and ignore conditions

Bumps the python-packages group with 2 updates: [scikit-image](https://github.com/scikit-image/scikit-image) and [numpy](https://github.com/numpy/numpy).


Updates `scikit-image` from 0.19.3 to 0.23.1
- [Release notes](https://github.com/scikit-image/scikit-image/releases)
- [Changelog](https://github.com/scikit-image/scikit-image/blob/main/RELEASE.txt)
- [Commits](scikit-image/scikit-image@v0.19.3...v0.23.1)

Updates `numpy` from 1.26.2 to 1.26.4
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v1.26.2...v1.26.4)

---
updated-dependencies:
- dependency-name: scikit-image
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Apr 15, 2024
Copy link
Author

dependabot bot commented on behalf of github Apr 22, 2024

Superseded by #222.

@dependabot dependabot bot closed this Apr 22, 2024
@dependabot dependabot bot deleted the dependabot/pip/python-packages-0306a81eda branch April 22, 2024 14:14
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
dependencies Pull requests that update a dependency file
Projects
None yet
Development

Successfully merging this pull request may close these issues.

0 participants