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Seqr loading wizard#101

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daniaki wants to merge 44 commits intostagingpopulationgenomics/seqr:stagingfrom wizardpopulationgenomics/seqr:wizardCopy head branch name to clipboard

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Commits

Commits on Oct 27, 2021

• Dev file for getting a PG service running locally via Docker.

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• dotenv template file for devs

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• basic dev environment for conda

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• ignore .envrc and data/ directory created by Docker Compose

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Commits on Oct 28, 2021

• Temp webpack fixes from current OpenSSL3 breaking changes.

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• Parent wizard component and integration with Project routes

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Commits on Oct 29, 2021

• Ignore idea and vscode dirs

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• Serve 401 if user doesn't have edit permissions

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Commits on Nov 1, 2021

• Renamed from OnboardingWizard

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• Re-usable form components relating to UI

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• Setting up the multi-step form

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• Welcome step

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• Export steps from steps module

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• Renamed components

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Commits on Nov 8, 2021

• Outline of sections

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• Stubs

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• Module export

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• Implemented state handling for changes occurring in each form step

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• Minor refactoring favouring positivity over negativity in args

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Commits on Jan 19, 2022

• Merge branch 'dev' of https://github.com/populationgenomics/seqr into wizard

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Commits on Jan 27, 2022

• Renamed directory to DataLoadingWizard

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• renamed component

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• Text with some breathing space

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• Added papaparse for csv parsing

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• Metadata template file definitions

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• parsers for file fields

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• validators for file columns

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• Specification for how to parse and validate a column in a CSV/TSV file

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• Specification for how to parse a template file with many columns

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Commits on Jan 28, 2022

• Updated error messages

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• Renamed to TemplateUpload

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• Fixed a bug where errors returned as a nested list

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• Renamed import

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Commits on Feb 3, 2022

• New styled components with props

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• Moved to inner directory

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• Moved to inner directory

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• Instruction components with help/guide text

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• Encapsulating a row parsed from a template file

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• Pedigree template definition

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• Renamed

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• Import path update

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• Added new module exports

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• Added steps for pedigree, family and indiviual metadata uploads

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• Adding unique keys to lists for react performance; refactoring reusable components into own files

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