Changing back to correct download command

populationgenomics · Feb 2, 2025 · ee2cb9a · ee2cb9a
1 parent 68bb5ac
commit ee2cb9a
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/cpg_workflows/stages/realign_genotype_with_dragen.py b/cpg_workflows/stages/realign_genotype_with_dragen.py
@@ -330,9 +330,8 @@ def queue_jobs(self, sequencing_group: SequencingGroup, inputs: StageInput) -> S
             f"""
             {ICA_CLI_SETUP}
             icav2 projectdata download $(cat {ica_analysis_folder_id_path} | jq -r .analysis_output_fid) {sequencing_group.name} --exclude-source-path
-            gcloud storage cp --recursive {sequencing_group.name}/* gs://{bucket_name}/{GCP_FOLDER_FOR_ICA_DOWNLOAD}/{sequencing_group.name}
+            gcloud storage cp --recursive {sequencing_group.name} gs://{bucket_name}/{GCP_FOLDER_FOR_ICA_DOWNLOAD}/{sequencing_group.name}
         """,
-            # gcloud storage cp --recursive {sequencing_group.name}/*/{sequencing_group.name} gs://{bucket_name}/{GCP_FOLDER_FOR_ICA_DOWNLOAD}/{sequencing_group.name}
         )
 
         return self.make_outputs(