Merge pull request #654 from populationgenomics/reduce_seqr_load_stor…

…age_use

Reduce requested storage for seqr_loader jobs based on workflow sequencing type

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.21.1
+current_version = 1.21.2
 commit = True
 tag = False
 

.github/workflows/docker.yaml

@@ -15,7 +15,7 @@ permissions:
   contents: read
 
 env:
-  VERSION: 1.21.1
+  VERSION: 1.21.2
 
 jobs:
   docker:

cpg_workflows/resources.py

@@ -338,13 +338,17 @@ def joint_calling_scatter_count(sequencing_group_count: int) -> int:
 
 def storage_for_joint_vcf(
     sequencing_group_count: int | None, site_only: bool = True
-) -> int | None:
+) -> float | None:
     """
     Storage enough to fit and process a joint-called VCF
     """
     if not sequencing_group_count:
         return None
-    gb_per_sequencing_group = 1
-    if not site_only:
-        gb_per_sequencing_group = 4
+    if get_config()['workflow']['sequencing_type'] == 'exome':
+        gb_per_sequencing_group = 0.1
+    else:
+        gb_per_sequencing_group = 1.0
+        if not site_only:
+            gb_per_sequencing_group = 1.5
+
     return gb_per_sequencing_group * sequencing_group_count

setup.py

@@ -5,7 +5,7 @@
 setup(
     name='cpg-workflows',
     # This tag is automatically updated by bumpversion
-    version='1.21.1',
+    version='1.21.2',
     description='CPG workflows for Hail Batch',
     long_description=open('README.md').read(),
     long_description_content_type='text/markdown',