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Update scripts, rename variables from CICE_ to ICE_ to be more
reusable in icepack.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -7,14 +7,14 @@ else | |
| endif | ||
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| source ./cice.settings | ||
| source ${CICE_CASEDIR}/env.${CICE_MACHINE} || exit 2 | ||
| source ${ICE_CASEDIR}/env.${ICE_MACHINE} || exit 2 | ||
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| set jobfile = $1 | ||
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| set ntasks = ${CICE_NTASKS} | ||
| set nthrds = ${CICE_NTHRDS} | ||
| set maxtpn = ${CICE_MACHINE_TPNODE} | ||
| set acct = ${CICE_MACHINE_ACCT} | ||
| set ntasks = ${ICE_NTASKS} | ||
| set nthrds = ${ICE_NTHRDS} | ||
| set maxtpn = ${ICE_MACHINE_TPNODE} | ||
| set acct = ${ICE_MACHINE_ACCT} | ||
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| @ taskpernode = ${maxtpn} / $nthrds | ||
| @ nnodes = ${ntasks} / ${taskpernode} | ||
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@@ -34,7 +34,7 @@ EOF0 | |
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| #========================================== | ||
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| if (${CICE_MACHINE} =~ yellowstone*) then | ||
| if (${ICE_MACHINE} =~ yellowstone*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #BSUB -n ${ntasks} | ||
| #BSUB -R "span[ptile=${ptile}]" | ||
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@@ -44,44 +44,44 @@ cat >> ${jobfile} << EOFB | |
| #BSUB -a poe | ||
| #BSUB -o poe.stdout.%J | ||
| #BSUB -e poe.stderr.%J | ||
| #BSUB -J ${CICE_CASENAME} | ||
| #BSUB -W ${CICE_RUNLENGTH} | ||
| #BSUB -J ${ICE_CASENAME} | ||
| #BSUB -W ${ICE_RUNLENGTH} | ||
| #BSUB -P ${acct} | ||
| EOFB | ||
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| #========================================== | ||
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| else if (${CICE_MACHINE} =~ cheyenne*) then | ||
| else if (${ICE_MACHINE} =~ cheyenne*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #PBS -j oe | ||
| #PBS -m ae | ||
| #PBS -V | ||
| #PBS -q regular | ||
| #PBS -N ${CICE_CASENAME} | ||
| #PBS -A ${CICE_ACCT} | ||
| #PBS -N ${ICE_CASENAME} | ||
| #PBS -A ${ICE_ACCT} | ||
| #PBS -l select=${nnodes}:ncpus=${corespernode}:mpiprocs=${taskpernodelimit}:ompthreads=${nthrds} | ||
| #PBS -l walltime=${CICE_RUNLENGTH} | ||
| #PBS -l walltime=${ICE_RUNLENGTH} | ||
| EOFB | ||
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| else if (${CICE_MACHINE} =~ thunder* || ${CICE_MACHINE} =~ gordon* || ${CICE_MACHINE} =~ conrad*) then | ||
| else if (${ICE_MACHINE} =~ thunder* || ${ICE_MACHINE} =~ gordon* || ${ICE_MACHINE} =~ conrad*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #PBS -N ${CICE_CASENAME} | ||
| #PBS -N ${ICE_CASENAME} | ||
| #PBS -q debug | ||
| #PBS -A ${acct} | ||
| #PBS -l select=${nnodes}:ncpus=${maxtpn}:mpiprocs=${taskpernode} | ||
| #PBS -l walltime=${CICE_RUNLENGTH} | ||
| #PBS -l walltime=${ICE_RUNLENGTH} | ||
| #PBS -j oe | ||
| ###PBS -M [email protected] | ||
| ###PBS -m be | ||
| EOFB | ||
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| else if (${CICE_MACHINE} =~ cori*) then | ||
| else if (${ICE_MACHINE} =~ cori*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #SBATCH -J ${CICE_CASENAME} | ||
| #SBATCH -J ${ICE_CASENAME} | ||
| #SBATCH -p debug | ||
| ###SBATCH -A ${acct} | ||
| #SBATCH -N ${nnodes} | ||
| #SBATCH -t ${CICE_RUNLENGTH} | ||
| #SBATCH -t ${ICE_RUNLENGTH} | ||
| #SBATCH -L SCRATCH | ||
| #SBATCH -C haswell | ||
| ###SBATCH -e filename | ||
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@@ -90,10 +90,10 @@ cat >> ${jobfile} << EOFB | |
| ###SBATCH --mail-user [email protected] | ||
| EOFB | ||
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| else if (${CICE_MACHINE} =~ wolf*) then | ||
| else if (${ICE_MACHINE} =~ wolf*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #SBATCH -J ${CICE_CASENAME} | ||
| #SBATCH -t ${CICE_RUNLENGTH} | ||
| #SBATCH -J ${ICE_CASENAME} | ||
| #SBATCH -t ${ICE_RUNLENGTH} | ||
| #SBATCH -A ${acct} | ||
| #SBATCH -N ${nnodes} | ||
| #SBATCH -e slurm%j.err | ||
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@@ -103,10 +103,10 @@ cat >> ${jobfile} << EOFB | |
| #SBATCH --qos=low | ||
| EOFB | ||
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| else if (${CICE_MACHINE} =~ pinto*) then | ||
| else if (${ICE_MACHINE} =~ pinto*) then | ||
| cat >> ${jobfile} << EOFB | ||
| #SBATCH -J ${CICE_CASENAME} | ||
| #SBATCH -t ${CICE_RUNLENGTH} | ||
| #SBATCH -J ${ICE_CASENAME} | ||
| #SBATCH -t ${ICE_RUNLENGTH} | ||
| #SBATCH -A ${acct} | ||
| #SBATCH -N ${nnodes} | ||
| #SBATCH -e slurm%j.err | ||
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@@ -117,7 +117,7 @@ cat >> ${jobfile} << EOFB | |
| EOFB | ||
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| else | ||
| echo "${0} ERROR: ${CICE_MACHINE} unknown" | ||
| echo "${0} ERROR: ${ICE_MACHINE} unknown" | ||
| exit -1 | ||
| endif | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,102 +1,102 @@ | ||
| #! /bin/csh -f | ||
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| source ./cice.settings | ||
| source ${CICE_CASEDIR}/env.${CICE_MACHINE} || exit 2 | ||
| source ${ICE_CASEDIR}/env.${ICE_MACHINE} || exit 2 | ||
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| if (${CICE_MACHINE} != ${CICE_MACHINE_ENVNAME}) then | ||
| echo "WARNING, is CICE_MACHINE setting OK, ${CICE_MACHINE}, ${CICE_MACHINE_ENV}" | ||
| if (${ICE_MACHINE} != ${ICE_MACHINE_ENVNAME}) then | ||
| echo "WARNING, is ICE_MACHINE setting OK, ${ICE_MACHINE}, ${ICE_MACHINE_ENV}" | ||
| endif | ||
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| echo " " | ||
| echo "${0}:" | ||
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| set stamp = `date '+%y%m%d-%H%M%S'` | ||
| set CICE_BLDLOG_FILE = "cice.bldlog.${stamp}" | ||
| set ICE_BLDLOG_FILE = "cice.bldlog.${stamp}" | ||
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| if (${CICE_CLEANBUILD} == 'true') then | ||
| if (${ICE_CLEANBUILD} == 'true') then | ||
| echo "cleaning objdir" | ||
| rm -r -f ${CICE_OBJDIR} | ||
| rm -r -f ${ICE_OBJDIR} | ||
| endif | ||
| if !(-d ${CICE_OBJDIR}) mkdir -p ${CICE_OBJDIR} | ||
| cd ${CICE_OBJDIR} | ||
| if !(-d ${ICE_OBJDIR}) mkdir -p ${ICE_OBJDIR} | ||
| cd ${ICE_OBJDIR} | ||
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| setenv CICE_CPPDEFS "-DNXGLOB=${CICE_NXGLOB} -DNYGLOB=${CICE_NYGLOB} -DBLCKX=${CICE_BLCKX} -DBLCKY=${CICE_BLCKY} -DMXBLCKS=${CICE_MXBLCKS} -DNICELYR=${NICELYR} -DNSNWLYR=${NSNWLYR} -DNICECAT=${NICECAT} -DTRAGE=${TRAGE} -DTRFY=${TRFY} -DTRLVL=${TRLVL} -DTRPND=${TRPND} -DTRBRI=${TRBRI} -DNTRAERO=${NTRAERO} -DTRZS=${TRZS} -DNBGCLYR=${NBGCLYR} -DTRALG=${TRALG} -DTRBGCZ=${TRBGCZ} -DTRDOC=${TRDOC} -DTRDOC=${TRDOC} -DTRDIC=${TRDIC} -DTRDON=${TRDON} -DTRFED=${TRFED} -DTRFEP=${TRFEP} -DTRZAERO=${TRZAERO} -DTRBGCS=${TRBGCS} -DNUMIN=${NUMIN} -DNUMAX=${NUMAX}" | ||
| setenv ICE_CPPDEFS "-DNXGLOB=${ICE_NXGLOB} -DNYGLOB=${ICE_NYGLOB} -DBLCKX=${ICE_BLCKX} -DBLCKY=${ICE_BLCKY} -DMXBLCKS=${ICE_MXBLCKS} -DNICELYR=${NICELYR} -DNSNWLYR=${NSNWLYR} -DNICECAT=${NICECAT} -DTRAGE=${TRAGE} -DTRFY=${TRFY} -DTRLVL=${TRLVL} -DTRPND=${TRPND} -DTRBRI=${TRBRI} -DNTRAERO=${NTRAERO} -DTRZS=${TRZS} -DNBGCLYR=${NBGCLYR} -DTRALG=${TRALG} -DTRBGCZ=${TRBGCZ} -DTRDOC=${TRDOC} -DTRDOC=${TRDOC} -DTRDIC=${TRDIC} -DTRDON=${TRDON} -DTRFED=${TRFED} -DTRFEP=${TRFEP} -DTRZAERO=${TRZAERO} -DTRBGCS=${TRBGCS} -DNUMIN=${NUMIN} -DNUMAX=${NUMAX}" | ||
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| if ($DITTO == 'yes') then | ||
| setenv CICE_CPPDEFS "${CICE_CPPDEFS} -DREPRODUCIBLE" | ||
| setenv ICE_CPPDEFS "${ICE_CPPDEFS} -DREPRODUCIBLE" | ||
| endif | ||
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| if (${CICE_NTASKS} == 1) then | ||
| setenv CICE_COMMDIR serial | ||
| if (${ICE_NTASKS} == 1) then | ||
| setenv ICE_COMMDIR serial | ||
| else | ||
| setenv CICE_COMMDIR mpi | ||
| setenv ICE_COMMDIR mpi | ||
| endif | ||
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| if (${CICE_IOTYPE} == 'netcdf') then | ||
| if (${ICE_IOTYPE} == 'netcdf') then | ||
| set IODIR = io_netcdf | ||
| setenv CICE_CPPDEFS "${CICE_CPPDEFS} -Dncdf" | ||
| else if (${CICE_IOTYPE} == 'pio') then | ||
| setenv ICE_CPPDEFS "${ICE_CPPDEFS} -Dncdf" | ||
| else if (${ICE_IOTYPE} == 'pio') then | ||
| set IODIR = io_pio | ||
| setenv CICE_CPPDEFS "${CICE_CPPDEFS} -Dncdf" | ||
| setenv ICE_CPPDEFS "${ICE_CPPDEFS} -Dncdf" | ||
| else | ||
| set IODIR = io_binary | ||
| endif | ||
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| ### List of source code directories (in order of importance). | ||
| cat >! Filepath << EOF | ||
| ${CICE_SANDBOX}/cicecore/drivers/${CICE_DRVOPT} | ||
| ${CICE_SANDBOX}/cicecore/cicedynB/dynamics | ||
| ${CICE_SANDBOX}/cicecore/cicedynB/general | ||
| ${CICE_SANDBOX}/cicecore/cicedynB/analysis | ||
| ${CICE_SANDBOX}/cicecore/cicedynB/infrastructure | ||
| ${CICE_SANDBOX}/cicecore/cicedynB/infrastructure/io/$IODIR | ||
| ${CICE_SANDBOX}/cicecore/cicedynB/infrastructure/comm/${CICE_COMMDIR} | ||
| ${CICE_SANDBOX}/cicecore/shared | ||
| ${CICE_SANDBOX}/cicecore/shared/constants/${CICE_CONSTOPT} | ||
| ${CICE_SANDBOX}/icepack/columnphysics | ||
| ${CICE_SANDBOX}/icepack/columnphysics/constants/${CICE_CONSTOPT} | ||
| ${ICE_SANDBOX}/cicecore/drivers/${ICE_DRVOPT} | ||
| ${ICE_SANDBOX}/cicecore/cicedynB/dynamics | ||
| ${ICE_SANDBOX}/cicecore/cicedynB/general | ||
| ${ICE_SANDBOX}/cicecore/cicedynB/analysis | ||
| ${ICE_SANDBOX}/cicecore/cicedynB/infrastructure | ||
| ${ICE_SANDBOX}/cicecore/cicedynB/infrastructure/io/$IODIR | ||
| ${ICE_SANDBOX}/cicecore/cicedynB/infrastructure/comm/${ICE_COMMDIR} | ||
| ${ICE_SANDBOX}/cicecore/shared | ||
| ${ICE_SANDBOX}/cicecore/shared/constants/${ICE_CONSTOPT} | ||
| ${ICE_SANDBOX}/icepack/columnphysics | ||
| ${ICE_SANDBOX}/icepack/columnphysics/constants/${ICE_CONSTOPT} | ||
| EOF | ||
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| echo " " | ||
| echo CICE_GRID = ${CICE_GRID} | ||
| echo CICE_NTASK = ${CICE_NTASKS} | ||
| echo CICE_NTHRD = ${CICE_NTHRDS} | ||
| echo ICE_GRID = ${ICE_GRID} | ||
| echo ICE_NTASK = ${ICE_NTASKS} | ||
| echo ICE_NTHRD = ${ICE_NTHRDS} | ||
| echo "global N, block_size" | ||
| echo "x ${CICE_NXGLOB}, ${CICE_BLCKX}" | ||
| echo "y ${CICE_NYGLOB}, ${CICE_BLCKY}" | ||
| echo "max_blocks = ${CICE_MXBLCKS}" | ||
| echo "CICE_CPPDEFS = ${CICE_CPPDEFS}" | ||
| echo "x ${ICE_NXGLOB}, ${ICE_BLCKX}" | ||
| echo "y ${ICE_NYGLOB}, ${ICE_BLCKY}" | ||
| echo "max_blocks = ${ICE_MXBLCKS}" | ||
| echo "ICE_CPPDEFS = ${ICE_CPPDEFS}" | ||
| echo "Filepath = " | ||
| cat ${CICE_OBJDIR}/Filepath | ||
| cat ${ICE_OBJDIR}/Filepath | ||
| echo " " | ||
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| echo "building makdep" | ||
| cc -o makdep ${CICE_CASEDIR}/makdep.c || exit 2 | ||
| cc -o makdep ${ICE_CASEDIR}/makdep.c || exit 2 | ||
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| echo "building cice > ${CICE_OBJDIR}/${CICE_BLDLOG_FILE}" | ||
| if !(-d ${CICE_RUNDIR}) mkdir -p ${CICE_RUNDIR} | ||
| if !($?CICE_MACHINE_BLDTHRDS) then | ||
| set CICE_MACHINE_BLDTHRDS = 1 | ||
| echo "building cice > ${ICE_OBJDIR}/${ICE_BLDLOG_FILE}" | ||
| if !(-d ${ICE_RUNDIR}) mkdir -p ${ICE_RUNDIR} | ||
| if !($?ICE_MACHINE_BLDTHRDS) then | ||
| set ICE_MACHINE_BLDTHRDS = 1 | ||
| endif | ||
| if (-e ${CICE_BLDLOG_FILE}) rm ${CICE_BLDLOG_FILE} | ||
| gmake -j ${CICE_MACHINE_BLDTHRDS} VPFILE=Filepath EXEC=${CICE_RUNDIR}/cice CICE_CPPDEFSDEFS="${CICE_CPPDEFS}" \ | ||
| -f ${CICE_CASEDIR}/Makefile MACFILE=${CICE_CASEDIR}/Macros.${CICE_MACHINE} | tee ${CICE_BLDLOG_FILE} | ||
| echo "#---" >! ${CICE_CASEDIR}/test_output | ||
| if (-e ${ICE_BLDLOG_FILE}) rm ${ICE_BLDLOG_FILE} | ||
| gmake -j ${ICE_MACHINE_BLDTHRDS} VPFILE=Filepath EXEC=${ICE_RUNDIR}/cice ICE_CPPDEFSDEFS="${ICE_CPPDEFS}" \ | ||
| -f ${ICE_CASEDIR}/Makefile MACFILE=${ICE_CASEDIR}/Macros.${ICE_MACHINE} | tee ${ICE_BLDLOG_FILE} | ||
| echo "#---" >! ${ICE_CASEDIR}/test_output | ||
| if ($status != 0) then | ||
| echo "${0}: COMPILE FAILED, see" | ||
| echo " cat ${CICE_OBJDIR}/${CICE_BLDLOG_FILE}" | ||
| if ( ${CICE_TEST} != ${CICE_SPVAL} ) then | ||
| echo " cat ${ICE_OBJDIR}/${ICE_BLDLOG_FILE}" | ||
| if ( ${ICE_TEST} != ${ICE_SPVAL} ) then | ||
| # This is a test case. Write output to test_output file | ||
| echo "FAIL ${CICE_TESTNAME} build" >> ${CICE_CASEDIR}/test_output | ||
| echo "FAIL ${ICE_TESTNAME} build" >> ${ICE_CASEDIR}/test_output | ||
| endif | ||
| exit 99 | ||
| endif | ||
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| if !(-d ${CICE_LOGDIR}) mkdir -p ${CICE_LOGDIR} | ||
| cp -p ${CICE_BLDLOG_FILE} ${CICE_LOGDIR}/ | ||
| echo "`date` ${0}:${CICE_CASENAME} build completed ${CICE_BLDLOG_FILE}" >> ${CICE_CASEDIR}/README.case | ||
| echo "${0}: COMPILE SUCCESSFUL, ${CICE_LOGDIR}/${CICE_BLDLOG_FILE}" | ||
| if ( ${CICE_TEST} != ${CICE_SPVAL} ) then | ||
| echo "PASS ${CICE_TESTNAME} build" >> ${CICE_CASEDIR}/test_output | ||
| if !(-d ${ICE_LOGDIR}) mkdir -p ${ICE_LOGDIR} | ||
| cp -p ${ICE_BLDLOG_FILE} ${ICE_LOGDIR}/ | ||
| echo "`date` ${0}:${ICE_CASENAME} build completed ${ICE_BLDLOG_FILE}" >> ${ICE_CASEDIR}/README.case | ||
| echo "${0}: COMPILE SUCCESSFUL, ${ICE_LOGDIR}/${ICE_BLDLOG_FILE}" | ||
| if ( ${ICE_TEST} != ${ICE_SPVAL} ) then | ||
| echo "PASS ${ICE_TESTNAME} build" >> ${ICE_CASEDIR}/test_output | ||
| endif | ||
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