Include CGE-Predicted Phenotypes for PointFinder results

[apetkau]

As a complement to #167 (which included CGE-Predicted Phenotypes for ResFinder results) it would be nice to do the same thing for the PointFinder results. For example, as shown in the Phenotype column here https://bitbucket.org/genomicepidemiology/pointfinder_db/src/master/salmonella/phenotypes.txt

[emarinier]

As discussed, as far as I can tell, the phenotypes.txt files only exist in newer versions of the database (June 2022 onwards).

Since we don't use this version of the database, I will close this, as instructed. If we update our version of the database used and want to implement this later, the WIP branch is here:

• dev/cge-pointfinder-prediction

[emarinier]

https://bitbucket.org/genomicepidemiology/pointfinder_db/src/master/salmonella/resistens-overview.txt

The resistens-overview.txt files have a Resistance column that can be used for Pointfinder.

[apetkau]

Fixed in #190