Fix file processor running on files that are on unfinished upload runs. #1506
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description of changes
Added a filtering step to SequencingObjectProcessingService such that files that are on a sequencing run that is not in a COMPLETE state are not picked up for processing.
Related issue
Link to the GitHub issue this pull request addresses using the
#issuenum
format. If it completes an issue, useFixes #issuenum
to automatically close the issue.Fixes #1505
Fixes the race condition issue of files having FastQC run on them before they are fully uploaded.
How to test changes
Checklist
Things for the developer to confirm they've done before the PR should be accepted: