22.03 Performance Release

[ericenns]

Description of changes

This PR started off as just fixing a scalability issue in ProjectEventHandler and has since transformed into a performance release that enables Users to have massive projects (i.e. >=100,000 samples).

The original Scalability issue that I identified was that as the number of Samples increased in a Project, certain operations would increase in time. An example is as follows:

1. Create a fresh Project
2. Create 5000 samples in that Project consecutively
   • Note: I was using API methods in irida-uploader to do this (specifically send_sample);

Here are the results of the test:

Experiment Name	IRIDA Version	IRIDA Uploader Version	Cumulative Time
time.exp1	22.01.X	0.7.1	5 hours and 30 minutes
time.exp2	22.03	0.7.1	20 minutes
time.exp3	22.03	0.8 beta	5 minutes

Summary of Changes:

• [All]: Fixed scalability bug in updating Project modifiedDate during handling of ProjectEvent that was increasing in operation time as number of Samples increased within a project.
• [UI]: Fixed load times on Project Samples page.
• [UI]: Fixed text overflow issue in Command-line Linker modal.
• [UI]: Fixed bug with Command-line Linker modal making multiple requests to the server to get the command string.
• [UI]: Fixed issue with CSV/XLSX export on linelist page from not completing on massive projects >100,000 samples.
• [UI]: Adding in batch loading to linelist page (provides feedback to user, important on large projects >5000 samples)
• [UI]: Added a progress indicator when loading samples into the linelist table.
• [UI]: Added a warning notification when selecting all samples on the project samples page.
• [UI]: Added in missing Illumina, PacBio, and Ion Torrent instruments for NCBI submission.

Related issue

Link to the GitHub issue this pull request addresses using the #issuenum format. If it completes an issue, use Fixes #issuenum to automatically close the issue.

Checklist

Things for the developer to confirm they've done before the PR should be accepted:

• CHANGELOG.md (and UPGRADING.md if necessary) updated with information for new change.
• Tests added (or description of how to test) for any new features.
  * [ ] User documentation updated for UI or technical changes.

[deepsidhu85]

This is looking reaallyy good! Great work @ericenns @joshsadam. Just a few small things below

[deepsidhu85]

This looks really good. Thanks guys! That's all from me