Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)

gradle-build (galaxy_testing)

Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)

gradle-build (galaxy_testing)

Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)

AnalysisExecutionServiceGalaxyIT.testCleanupCompletedAnalysisSuccess(): src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1454

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 26/1/testReference10106205713524623540.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunFailErrorWithJob(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L402

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 35/1/testReference6705755093062304410.fasta does not exist

AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccess(): src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L157

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 39/1/testReference14096928531883464955.fasta does not exist

CartPageIT.testCartPageAsAdmin(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/CartPageIT.java#L241

org.opentest4j.AssertionFailedError: The add cart to sample button should be displayed ==> expected: <true> but was: <false>

CartPageIT.testCartPageAsAdmin(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/CartPageIT.java#L419

java.lang.IndexOutOfBoundsException: Index 0 out of bounds for length 0

LoginPageLdapNoServerIT.testLoginNoLdapServer(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41

org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:41849/irida/login?ldap-error=6> but was: <http://127.0.0.1:41849/irida/login?error=true>

AnalysisDetailsPageIT.testUnknownPipelineOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

AnalysisDetailsPageIT.testOutputFiles(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az666-31', ip: '10.1.0.10', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.71, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:37089}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:37089/devtoo..., se:cdpVersion: 120.0.6099.71, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 47fb85d00576d83851e21ae884fc106e

AnalysisDetailsPageIT.testSistrOutput(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az666-31', ip: '10.1.0.10', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.71, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:37089}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:37089/devtoo..., se:cdpVersion: 120.0.6099.71, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 47fb85d00576d83851e21ae884fc106e

AnalysisDetailsPageIT.testProvenance(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az666-31', ip: '10.1.0.10', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.71, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:37089}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:37089/devtoo..., se:cdpVersion: 120.0.6099.71, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 47fb85d00576d83851e21ae884fc106e

AnalysisDetailsPageIT.testSamplesPage(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L236

org.openqa.selenium.StaleElementReferenceException: stale element reference: stale element not found (Session info: chrome-headless-shell=120.0.6099.71) For documentation on this error, please visit: https://selenium.dev/exceptions/#stale_element_reference Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az666-31', ip: '10.1.0.10', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Command: [47fb85d00576d83851e21ae884fc106e, isElementDisplayed {id=2EEE067EEF32EE66095B457420D042BF_element_2148}] Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.71, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:37089}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:37089/devtoo..., se:cdpVersion: 120.0.6099.71, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Element: [[[[ChromeDriver: chrome-headless-shell on LINUX (47fb85d00576d83851e21ae884fc106e)] -> id: root]] -> css selector: span[title='Samples']] Session ID: 47fb85d00576d83851e21ae884fc106e

AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted(): src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az666-31', ip: '10.1.0.10', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1053-azure', java.version: '11.0.21' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 120.0.6099.71, chrome: {chromedriverVersion: 120.0.6099.71 (9729082fe617..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:37089}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:37089/devtoo..., se:cdpVersion: 120.0.6099.71, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: 47fb85d00576d83851e21ae884fc106e

gradle-build (open_api_testing)

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

gradle-build (open_api_testing)

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

gradle-build (file_system_testing)