Updated UPGRADING guide. · phac-nml/irida@dc1fc84

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L597

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 6/1/testReference6538161652077543340.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L728

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 18/1/testReference547065606858633284.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1374

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 24/1/testReference6573306848517166675.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1454

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 26/1/testReference16085998666608674655.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L157

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 39/1/testReference5275859664901849652.fasta does not exist

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

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