Updated UPGRADING guide. · phac-nml/irida@dc1fc84

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L597

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 6/1/testReference1369382024182395117.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1558

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 25/1/testReference12483652702505817006.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L215

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 33/1/testReference14466788891014987460.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L402

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 35/1/testReference18165048855288601082.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L172

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 40/1/testReference1460224660669320750.fasta does not exist

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

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