Merge pull request #1563 from phac-nml/update-installation-docs · phac-nml/irida@6d4696a

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1374

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 24/1/testReference12261230037868157720.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1235

org.opentest4j.AssertionFailedError: contigs should be equal ==> expected: <true> but was: <false>

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1558

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 25/1/testReference2672868733528274818.fasta does not exist

Publish Test Report: src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L215

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 33/1/testReference1751070676345009543.fasta does not exist

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

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