Integration Tests #6550
ericennsci-test.yml
on: schedule
docs-build
4m 47s
Matrix: gradle-build
Annotations
18 errors and 8 warnings
|
SequencingRunServiceImplIT.testDeleteFilesOnFilesystem():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/SequencingRunServiceImplIT.java#L293
org.opentest4j.AssertionFailedError: Sequence file should exist on the file system ==> expected: <true> but was: <false>
|
|
SequencingRunServiceImplIT.testAddSequenceFileToMiseqRunAsSequencer():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/SequencingRunServiceImplIT.java#L65
org.opentest4j.AssertionFailedError: Saved miseq run should have seqence file ==> expected: <true> but was: <false>
|
|
AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessPhylogenomicsPairedParameters():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L728
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 18/1/testReference5022575892863357911.fasta does not exist
|
|
AnalysisExecutionServiceGalaxyIT.testTransferAnalysisResultsSuccessAssemblyAnnotation():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1244
org.opentest4j.AssertionFailedError: annotations log should be correct ==> expected: <true> but was: <false>
|
|
AnalysisExecutionServiceGalaxyIT.testCleanupCompletedAnalysisSuccess():
src/test/java/ca/corefacility/bioinformatics/irida/service/analysis/execution/galaxy/impl/integration/AnalysisExecutionServiceGalaxyIT.java#L1454
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 26/1/testReference15608543796357249048.fasta does not exist
|
|
AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunCleanupFailInvalidRemoteAnalysisId():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L348
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 29/1/testReference16405627185415104803.fasta does not exist
|
|
AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunFailInvalidWorkflowStatus():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L306
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 38/1/testReference960834631550693763.fasta does not exist
|
|
AnalysisExecutionScheduledTaskImplIT.testFullAnalysisRunSuccessWithSampleUpdates():
src/test/java/ca/corefacility/bioinformatics/irida/service/impl/integration/AnalysisExecutionScheduledTaskImplIT.java#L172
java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 40/1/testReference5459717497461769868.fasta does not exist
|
|
LoginPageLdapNoServerIT.testLoginNoLdapServer():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/LoginPageLdapNoServerIT.java#L41
org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:36415/irida/login?ldap-error=6> but was: <http://127.0.0.1:36415/irida/login?error=true>
|
|
AnalysisDetailsPageIT.testUnknownPipelineOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L450
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
|
|
AnalysisDetailsPageIT.testOutputFiles():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L139
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az694-658', ip: '10.1.0.18', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:35565}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:35565/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 8eeb4fb9170c41cd736478888113ab3b
|
|
AnalysisDetailsPageIT.testSistrOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L285
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az694-658', ip: '10.1.0.18', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:35565}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:35565/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 8eeb4fb9170c41cd736478888113ab3b
|
|
AnalysisDetailsPageIT.testProvenance():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L206
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az694-658', ip: '10.1.0.18', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:35565}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:35565/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 8eeb4fb9170c41cd736478888113ab3b
|
|
AnalysisDetailsPageIT.testSamplesPage():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L236
org.openqa.selenium.NoSuchElementException: no such element: Unable to locate element: {"method":"css selector","selector":"span[title='Samples']"}
(Session info: chrome=131.0.6778.108)
For documentation on this error, please visit: https://selenium.dev/exceptions/#no_such_element
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az694-658', ip: '10.1.0.18', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Command: [8eeb4fb9170c41cd736478888113ab3b, findChildElement {id=f.332F57583349029F90A724692E31CE19.d.61928F5DD91C49D16E18A5330C8ED8C7.e.4115, using=css selector, value=span[title='Samples']}]
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:35565}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:35565/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 8eeb4fb9170c41cd736478888113ab3b
|
|
AnalysisDetailsPageIT.testPipelineResultsWithoutSpecialTab():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L193
org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>
|
|
AnalysisDetailsPageIT.testTabRoutingAnalysisCompleted():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L316
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az694-658', ip: '10.1.0.18', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:35565}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:35565/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 8eeb4fb9170c41cd736478888113ab3b
|
|
AnalysisDetailsPageIT.testTreeOutput():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L379
org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval)
Build info: version: '4.1.4', revision: '535d840ee2'
System info: host: 'fv-az694-658', ip: '10.1.0.18', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1074-azure', java.version: '17.0.13'
Driver info: org.openqa.selenium.chrome.ChromeDriver
Capabilities {acceptInsecureCerts: false, browserName: chrome, browserVersion: 131.0.6778.108, chrome: {chromedriverVersion: 131.0.6778.87 (ce31cae94873..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:35565}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:35565/devtoo..., se:cdpVersion: 131.0.6778.108, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true}
Session ID: 8eeb4fb9170c41cd736478888113ab3b
|
|
AnalysisDetailsPageIT.testAnalysisDetails():
src/test/java/ca/corefacility/bioinformatics/irida/ria/integration/analysis/AnalysisDetailsPageIT.java#L73
org.opentest4j.AssertionFailedError: The correct details are displayed for the analysis ==> expected: <true> but was: <false>
|
|
gradle-build (open_api_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
docs-build
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
gradle-build (file_system_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
gradle-build (rest_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
gradle-build (service_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
gradle-build (galaxy_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
gradle-build (galaxy_pipeline_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|
|
gradle-build (ui_testing)
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
|